Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30460
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    56   4e-09
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   2.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   4.1  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   4.1  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    26   4.1  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   5.4  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.4  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   7.1  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.4  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 28/44 (63%), Positives = 29/44 (65%)
 Frame = +1

Query: 115 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 246
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSM 73



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +3

Query: 234 RSINAGRRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           +S+N+  RF  DG+ I  + TP  L+ME+GD IE   +Q GG
Sbjct: 71  KSMNS-LRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 636 CQLNISQGIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLL 514
           C +NI    V+   ++++   +P+H  F T     SS +L+
Sbjct: 260 CSINIDTSTVDKLKNVFHPNIVPFHSAFHTDTFHDSSLLLI 300


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 420  LILTHWRWSILKIIKFTLGTLLR 352
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 213 HQFPERCVFLYFELYNCI 160
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 180  FELYNCIILT*YFQINVFVFSLLFI 106
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 213 HQFPERCVFLYFELYNCI 160
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 627 NISQGIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVQNYFLTLL 484
           N++  +    Y +  TYN P  +   T   + S+  ++  +NYFL +L
Sbjct: 284 NVTTALQPGIYEMNITYNFPVTEYKGTKTIMFSTTSVIGGKNYFLGIL 331


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEV 338
           R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 376 RLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -3

Query: 636 CQLNISQGIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLL 514
           C+ N+   ++++ +S W    + ++ L    N +   AMLL
Sbjct: 225 CESNVVLKLIDLAHSRWTKNTIDHNTLIGVKNLIHCFAMLL 265


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 88  INLKM---ADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 231
           IN+K    A + K ++ HI +   G+ NA+V+ KI K   ++  +   CD+
Sbjct: 158 INIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 591 IWYTYNLPYHKLFETHNALRSSAMLLCVQNYFLTLL 484
           ++Y   +    L E H  + +SA LL   NY L LL
Sbjct: 52  VFYILIMIIQHLKEIHYLISASAKLLLASNYLLELL 87


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 50  SIHSFVLIVSRTTLISKWLMKRREKTNTL 136
           +++ FV++V    L S W+M +  KT  L
Sbjct: 496 AVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,854
Number of Sequences: 5004
Number of extensions: 49263
Number of successful extensions: 108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)