Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30460
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 58 8e-09
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 56 2e-08
07_03_0990 + 23173868-23174200 37 0.012
07_03_0989 + 23161020-23161412 37 0.012
07_03_0988 + 23160028-23160360 33 0.20
01_04_0034 + 15318509-15319567 33 0.20
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 29 3.2
01_01_0771 - 5982826-5983327,5983424-5984772 29 4.2
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 9.7
01_05_0645 - 23899579-23904483 27 9.7
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +1
Query: 115 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 255
+G HINLKV GQD V F+IK+ T L+KLMNAYCDR + M +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAI 61
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
F FDG+ + TP LEME+GD I+ QTGG
Sbjct: 63 FLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Frame = +1
Query: 106 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 255
DEKK G HINLKV GQD V F+IK+ T L+KLMNAYCDR + ++ +
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSI 62
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
F FDG+ +N TP LEME+GD I+ QTGG
Sbjct: 64 FLFDGRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>07_03_0990 + 23173868-23174200
Length = 110
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 365
RF +DG+ ++ TP L+ME+GD ++ +++ GG +
Sbjct: 74 RFLYDGRRLSGWQTPAELDMEDGDEVDFFEELIGGAA 110
>07_03_0989 + 23161020-23161412
Length = 130
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 365
RF FDG+ + TP L+ME+GD + +++ GG +
Sbjct: 82 RFLFDGRRLRGWQTPAELQMEDGDEVNFFEELIGGAA 118
>07_03_0988 + 23160028-23160360
Length = 110
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
F FDG + + TP LEM +GDT++ + GG
Sbjct: 64 FLFDGIRLKGDMTPMGLEMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 264 FDGQPINENDTPTSLEMEEGDTIEVYQQQTG 356
++G+ + ++ TP L++E+GDTI +Q G
Sbjct: 322 YEGRRVQDSQTPDDLKLEDGDTIHAIARQVG 352
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEV 338
F FDG ++ TP L +E+ D +EV
Sbjct: 214 FAFDGDKVDAESTPEDLGLEDEDMVEV 240
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 299 WSVILIYWLPIKSESTTCIDRPALSQ*AFINFLRGVCFFIL 177
W V L+ WLP S +T +L AFI F GVC I+
Sbjct: 520 WGVPLVPWLPSLSIATNLFLMGSLGAQAFIRF--GVCTAIM 558
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/78 (24%), Positives = 40/78 (51%)
Frame = +1
Query: 97 KMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVDSDLMGN 276
K DE+K +NE +L L +D I++ +++ +RK + + G M+ D + +
Sbjct: 945 KRLDEQKKKNEQPDLISLFEDQKIMKQDLEE---IRKRLYMLESKEGFHMEEKDEPIQED 1001
Query: 277 Q*MRMTLQHHLRWKRATQ 330
+ T+Q +++ K T+
Sbjct: 1002 DHVVGTIQKYMKQKWYTE 1019
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/78 (24%), Positives = 40/78 (51%)
Frame = +1
Query: 97 KMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVDSDLMGN 276
K DE+K +NE +L L +D I++ +++ +RK + + G M+ D + +
Sbjct: 865 KRLDEQKKKNEQPDLISLFEDQKIMKQDLEE---IRKRLYMLESKEGFHMEEKDEPIQED 921
Query: 277 Q*MRMTLQHHLRWKRATQ 330
+ T+Q +++ K T+
Sbjct: 922 DHVVGTIQKYMKQKWYTE 939
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,323
Number of Sequences: 37544
Number of extensions: 281269
Number of successful extensions: 482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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