Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30460
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    55   5e-08
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    55   5e-08
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    55   5e-08
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    27   8.7  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    27   8.7  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +3

Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           RF FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 56  RFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +1

Query: 100 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 246
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAV 52


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +3

Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           RF FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 56  RFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +1

Query: 100 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 246
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAV 52


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +3

Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           RF FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 56  RFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +1

Query: 100 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 246
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAV 52


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 585 YTYNLPYHKLFETHNALRSSAMLLCVQNYFLTLLQIQMMFL 463
           + +NLPY   F T       AM LC + ++L  + +Q+MF+
Sbjct: 184 WLFNLPYSAFFVT-------AMYLCTKFFYLANVCLQLMFM 217


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 585 YTYNLPYHKLFETHNALRSSAMLLCVQNYFLTLLQIQMMFL 463
           + +NLPY   F T       AM LC + ++L  + +Q+MF+
Sbjct: 184 WLFNLPYSAFFVT-------AMYLCTKFFYLANVCLQLMFM 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,194
Number of Sequences: 27780
Number of extensions: 280295
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)