Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30460
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26840.1 68417.m03864 ubiquitin-like protein (SMT3) identical...    58   5e-09
At5g55160.1 68418.m06877 small ubiquitin-like modifier 2 (SUMO) ...    58   7e-09
At5g55170.1 68418.m06878 small ubiquitin-like modifier 3 (SUMO) ...    48   7e-06
At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO) ...    35   0.041
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-...    34   0.071
At5g48710.1 68418.m06029 ubiquitin-related similar to SP|O13351 ...    34   0.094
At2g34960.1 68415.m04290 amino acid permease family protein simi...    28   6.1  

>At4g26840.1 68417.m03864 ubiquitin-like protein (SMT3) identical to
           Ubiquitin-like protein SMT3 SP:P55852 from[Arabidopsis
           thaliana]; identical to cDNA SMT3 protein GI:1707371
          Length = 100

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
 Frame = +1

Query: 106 DEKKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 255
           D+K G+   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + M  +
Sbjct: 8   DKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSI 58



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           F FDG+ +    TP  L+ME+GD I+    QTGG
Sbjct: 60  FLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93


>At5g55160.1 68418.m06877 small ubiquitin-like modifier 2 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852 from
           [Arabidopsis thaliana]; identical to cDNA small
           ubiquitin-like modifier 2 (SUMO)  GI:22652843; contains
           Pfam profile PF00240: Ubiquitin family
          Length = 103

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 26/50 (52%), Positives = 33/50 (66%)
 Frame = +1

Query: 106 DEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 255
           D+K  +  HINLKV GQD   V F+IK+ T L+KLMNAYCDR  +    +
Sbjct: 8   DKKPDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSI 57



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           F FDG+ +    TP  LEME+GD I+    QTGG
Sbjct: 59  FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 92


>At5g55170.1 68418.m06878 small ubiquitin-like modifier 3 (SUMO)
           similar to SP|O13351 Ubiquitin-like protein smt3/pmt3
           {Schizosaccharomyces pombe}; identical to cDNA small
           ubiquitin-like modifier 3 (SUMO) GI:22652845
          Length = 111

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = +1

Query: 121 ENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 246
           +  H+ LKV  QD   V FK KK  PL+KLM  YCDR GL +
Sbjct: 14  QEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKL 55



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGV 362
           F F+G  I   +TP  L+ME+GD I+  +  +GG+
Sbjct: 60  FIFNGARIGGLETPDELDMEDGDVIDACRAMSGGL 94


>At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852
           [Arabidopsis thaliana]; contains INTERPRO:IPR000626
           ubiquitin domain; contains Pfam profile PF00240:
           Ubiquitin family; contains Pfam profile PF00240:
           Ubiquitin family;  identical to cDNA small
           ubiquitin-like modifier 5 (SUMO) mRNA GI:22652847
          Length = 108

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 88  INLKMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 255
           ++ K    +   +  + LKV  Q  A   +KI  H  L+KLM+AYC +  L    V
Sbjct: 13  VSKKSRSPETSPHMKVTLKVKNQQGAEDLYKIGTHAHLKKLMSAYCTKRNLDYSSV 68



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           RF ++G+ I    TP  L MEE D I +  +  GG
Sbjct: 69  RFVYNGREIKARQTPAQLHMEEEDEICMVMELGGG 103


>At1g68185.1 68414.m07789 ubiquitin-related similar to
           ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
           yeast]
          Length = 215

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 258 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQT 353
           F FDG  I+ + TP+ L ME+ D IEV+ ++T
Sbjct: 184 FIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215


>At5g48710.1 68418.m06029 ubiquitin-related similar to SP|O13351
           Ubiquitin-like protein smt3/pmt3 {Schizosaccharomyces
           pombe}
          Length = 114

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 359
           RF FDG  I E  TP  LE ++GD I+    Q  G
Sbjct: 70  RFLFDGSRIREYHTPDELERKDGDEIDAMLCQQSG 104


>At2g34960.1 68415.m04290 amino acid permease family protein similar
           to cationic amino acid transporter 3 [Rattus norvegicus]
           GI:2116552; contains Pfam profile PF00324: Amino acid
           permease
          Length = 569

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 299 WSVILIYWLPIKSESTTCIDRPALSQ*AFINFLRGVC 189
           W V L+ WLP  S +T      +L   AF+ F  GVC
Sbjct: 507 WGVPLVPWLPCLSIATNIFLMGSLGAMAFVRF--GVC 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,448
Number of Sequences: 28952
Number of extensions: 243931
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)