Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30459
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.4  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   9.4  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 1    ERERTSIDEPIETKKTKPDPQYLL--SSANIQNMDIDSVLE 117
            + +R S +EP+  K    DP ++L        N+ ID  LE
Sbjct: 1169 DSQRNSTNEPVRNKFPSDDPAFILLYECLRSSNVQIDESLE 1209


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 353 ASHFSDIVNFVHVNCVIFNG 412
           A HF D +N +  NC ++NG
Sbjct: 293 AQHFIDDMNLMFSNCFLYNG 312


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 7   ERTSIDEPIETKKTKPDP----QYLLSSANIQNMDIDSVLEKLHGP*QIDMLLMWALLIR 174
           E + I EPIET      P    + L S+ANI     D  LE+   P  ++  + ++L   
Sbjct: 240 ESSGISEPIETSNNNESPVSKHEALSSTANIVK---DGSLERTEPPNSLNSKISYSLYCN 296

Query: 175 SHCVLLYVKESY 210
              V  + + ++
Sbjct: 297 ETLVSFFRRPAF 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,202
Number of Sequences: 5004
Number of extensions: 62494
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)