Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30459
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0393 + 13435581-13435745,13435804-13436418,13437283-134373...    29   4.2  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     28   7.4  
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    28   7.4  

>05_03_0393 +
           13435581-13435745,13435804-13436418,13437283-13437349,
           13437605-13438239
          Length = 493

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 519 TAVLLSPSDLYLWHYIPLHRPLEVFL*HLRIMIVSFPLKIT 397
           TA+ L PS     HY+P  RP      HLR++ V+ P  +T
Sbjct: 80  TAISLRPSYTASLHYLPTERPGTAINFHLRLLSVN-PSTVT 119


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 727 CSLRSVY*KFYFTTKIINV*SSVITQPQVAFAFRPITKPL*FLFVRC 587
           CS+ +   KFYF  +  N+ S +   P+  F+   IT P+ F+   C
Sbjct: 148 CSIAACQGKFYFNARFHNI-SVLEFTPEPTFSSIAITDPMDFVGAAC 193


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -1

Query: 115 LVLNLYPYFEYLQMTINIVDPVLFSLFQ 32
           L+LN+YPY++Y  M  N V P+ ++LF+
Sbjct: 195 LMLNVYPYYDY--MRSNGVIPLDYALFR 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,344
Number of Sequences: 37544
Number of extensions: 345318
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)