Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30459
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024492-8|AAF98620.1|  336|Caenorhabditis elegans Serpentine re...    29   5.0  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    28   8.8  

>AF024492-8|AAF98620.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein130 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 332 YNVICYCASHFSDIVNFVHVNCVIFNGKLT----IIIRKCYKK 448
           Y V  +  SHF  I+N + +N + F+G ++    + I K Y+K
Sbjct: 260 YIVFAFANSHFDQILNNISLNIMAFHGLISSAVMLTIHKPYRK 302


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 390 TCTKFTISLKWLAQ*HITLYYLNILINPITVGLNYVFYTYNFIVLIKAFL 241
           T   F I+L        T  +++I ++ + VG+ YVFY+ +F++L++  L
Sbjct: 525 TLPLFNITLSQRIATFATAPFMSIFLHWM-VGMVYVFYSASFVILLREIL 573


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 546 PHIASSKWWTAVLLSPSDLYLW 481
           PHI+ ++ WT  L  P  L LW
Sbjct: 222 PHISGAREWTVCLDEPDQLALW 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,423
Number of Sequences: 27780
Number of extensions: 349507
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)