Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30455
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   8.3  

>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 721 HCPSSVFIHS*LRSKRKNVTHSLTRSFARS 632
           +C +S+ IH   +  RK V  SLT SF+R+
Sbjct: 477 YCENSLIIHKNRQDVRKGVIESLTFSFSRN 506


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 721 HCPSSVFIHS*LRSKRKNVTHSLTRSFARS 632
           +C +S+ IH   +  RK V  SLT SF+R+
Sbjct: 507 YCENSLIIHKNRQDVRKGVIESLTFSFSRN 536


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 288  AASHHFFSLPVCQCL*SWCYRSSDNIERPKLVGPERHLP 172
            AA+H+    P+CQ   +WC+     ++ P   G  + LP
Sbjct: 1867 AAAHNTDCSPICQKQPNWCHNGGRCLDTPGYPGKCKCLP 1905


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,094
Number of Sequences: 27780
Number of extensions: 220013
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)