Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30454
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.5  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   HYQRQRSSLQGRDRAY 49
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   HYQRQRSSLQGRDRAY 49
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   HYQRQRSSLQGRDRAY 49
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   HYQRQRSSLQGRDRAY 49
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   HYQRQRSSLQGRDRAY 49
           HY R+RS  + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   HYQRQRSSLQGRDRAY 49
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 144 KSTMEDEKLKEKISDSDKQTILDKCN 221
           + +++ EK+K  +S    +T+  KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 477 GRXTCXVECWFN 442
           G  TC + CW N
Sbjct: 101 GYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 477 GRXTCXVECWFN 442
           G  TC + CW N
Sbjct: 154 GYATCVLSCWTN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,160
Number of Sequences: 438
Number of extensions: 2072
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)