Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30453
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    29   0.52 
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   3.6  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   3.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   6.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.3  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   8.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 524 LCTYFGLAVYYMRVNSALTIRPITRISYNFAKINDI 417
           LC++    +YY+ V   +TI P+ +I  NF K++ +
Sbjct: 298 LCSFLSQVMYYLEVAIDITIPPV-KIIVNFDKVDSL 332


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 496 YTASPKYVQSLEKIFEPNIDSYYSTCV 576
           Y   P  V+ L KI+ PNID   + C+
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCL 106


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 396 LFVCSCSPRITVWDNISWYKFRDH 325
           L  CSC   + +WD  +  K RD+
Sbjct: 270 LLSCSCDKSVILWDAFTGEKLRDY 293


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 332 GTIHRLL-GC*-NNSCVKLGQVTMNIFFISN*Q 240
           GT+  L+ GC  +N+C + G V  N++F  N Q
Sbjct: 420 GTVQLLIPGCTYDNTCSQRGSVIANVYFAKNKQ 452


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 518 TYFGLAVYYMRVNSALTIRPITRISYNFAK 429
           T F L V Y R   +L+++PI  +   FA+
Sbjct: 86  TIFDLIVQYAREGDSLSLQPILELLTQFAR 115


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 496 YTASPKYVQSLEKIFEPNIDSYYSTCV 576
           Y   P  V+ L KI+ PN+D     C+
Sbjct: 61  YPMMPPNVRFLTKIYHPNVDKLGRICL 87


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 302 FNNPGVYEWSLNLYQLILSQTVILGEQEQTNNTIIKVHIY 421
           F NPG+ +   +++Q ++S T  +  +    +T+I++  Y
Sbjct: 534 FQNPGLKDCIDHIFQQLISDTSSVTVRRLATSTLIRLFYY 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,126
Number of Sequences: 5004
Number of extensions: 39586
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)