Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30453
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine re...    28   5.8  
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a prot...    27   7.7  

>AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 2 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 332 LNLYQLILSQTVILGEQEQTNNTIIKVHIY 421
           L LY LIL+  +I+ +++  N  IIKV+ Y
Sbjct: 283 LPLYYLILAACLIIEDKKHRNQNIIKVNNY 312


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 445 DIRVMGLIVSAEFTRI*YTASPKYVQSLEKIFEPNIDSYYSTCVI 579
           DIR + LI S  F    +  SP  ++ LE++F+PN+D     C I
Sbjct: 413 DIRNI-LIESPHFRYGRFKFSPITIRGLEQMFDPNLDRLPLDCRI 456


>AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a protein
           protein 221 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 445 DIRVMGLIVSAEFTRI*YTASPKYVQSLEKIFEPNIDSYYSTCVI 579
           DIR + LI S  F    +  SP  ++ LE++F+PN+D     C I
Sbjct: 379 DIRNI-LIESPHFRYGRFKFSPITIRGLEQMFDPNLDRLPLDCRI 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,512
Number of Sequences: 27780
Number of extensions: 214527
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)