Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30453
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   6.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 293 KNCFNNPGVYEWSLNLYQLILSQTV 367
           KNC ++  ++E   NL++ I  Q +
Sbjct: 316 KNCADSGSIWETGKNLFEFIRKQVL 340


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 323 EW--SLNLYQLILSQTVILGEQEQTNNTIIKVHIYRLF 430
           EW  +LNL   +    + L E E T   ++  +IY L+
Sbjct: 93  EWKKNLNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLY 130


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 341 YQLILSQTVILGEQEQTNNTIIKVHIYRL 427
           ++ +L+  V +    +  NT+IK   YRL
Sbjct: 465 FESMLNNGVSIQSHAKAKNTMIKARQYRL 493


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 341 YQLILSQTVILGEQEQTNNTIIKVHIYRL 427
           ++ +L+  V +    +  NT+IK   YRL
Sbjct: 465 FESMLNNGVSIQSHAKAKNTMIKARQYRL 493


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 341 YQLILSQTVILGEQEQTNNTIIKVHIYRL 427
           ++ +L+  V +    +  NT+IK   YRL
Sbjct: 91  FESMLNNGVSIQSHAKAKNTMIKARQYRL 119


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 77  CYSAQKISYCIIN 39
           C +AQK S C+I+
Sbjct: 111 CLTAQKFSRCVID 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,724
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)