Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30451
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.2  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   5.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.8  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 522 SSKSNKLSHSIKQTNETNFCPK-SRMLTC 439
           S + N+L ++ K   E+N C K S++L C
Sbjct: 93  SEQVNRLVNNCKDITESNSCKKSSKLLQC 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 692 KSTFKFYHSESLPLPLQSNTKVTVVEGMRYNN 597
           +S F FYH E LP        V  +EG  + +
Sbjct: 341 RSLFDFYHPEDLPFIKDIYETVIKLEGASFRS 372


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 692 KSTFKFYHSESLPLPLQSNTKVTVVEGMRYNN 597
           +S F FYH E LP        V  +EG  + +
Sbjct: 47  RSLFDFYHPEDLPFIKDIYETVIKLEGASFRS 78


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPIPV 123


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 716 GNNMRNHSKSTFKFYHSESLPLPLQSNTKVTVVEGMR 606
           GN++  H K    F    SLP P+ + T  TV + +R
Sbjct: 137 GNHLPFHEKLVESFPRGGSLPTPV-TPTPTTVQQLLR 172


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPV 123


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 99  NNYNNYKKLYYNINYIEQVPVPI 121


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 109 NNYNNYKKLYYNINYIEQIPVPV 131


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 713 NNMRNHSKSTFKFYHSESLPLPL 645
           NN  N+ K  +   + E +P+P+
Sbjct: 344 NNYNNYKKLYYNIINIEQIPVPV 366


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 300 PLSTCIFCMDTK 335
           PL  C FC+D K
Sbjct: 423 PLDKCYFCLDGK 434


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 486 VLWSGKVCYFCCL 524
           V W+GKV YF  L
Sbjct: 228 VKWTGKVVYFTSL 240


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 486 VLWSGKVCYFCCL 524
           V W+GKV YF  L
Sbjct: 281 VKWTGKVVYFTSL 293


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 513 FCCLGRCSNCIQI 551
           + C GRCS+ +Q+
Sbjct: 51  YACRGRCSSYLQV 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,820
Number of Sequences: 438
Number of extensions: 3020
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)