Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30450
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   3.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   6.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   8.8  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 248 YIYIYKCIVYIDIICTTRYSNIYNEVKQTSKEKQLF 141
           Y++IY  I  ID++   + S +Y+   ++    Q+F
Sbjct: 250 YLHIYDFINAIDLVWMKQGSEVYHSTLESKMSGQIF 285


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 40   MSIFKLYIIIHGHEYVRC**E*KLSESYQLSLRPNN 147
            + I + ++ IHGH Y+R     K+ +   L+ R NN
Sbjct: 1020 LDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNN 1055


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 364 VIVKLWTQCCYIG*KKNFNLK 426
           V++ LWT CC     K  N+K
Sbjct: 617 VLLSLWTACCVTDEGKEKNIK 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,376
Number of Sequences: 5004
Number of extensions: 26202
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)