Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30450
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical...    29   1.1  
AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical...    29   1.1  
AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    29   1.9  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   3.4  

>AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.16 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 266 HYVPLMYIYIYKCIVYIDIICTTRYSNIYNEVK 168
           H   L++ Y+  C+  ID     R+   YNE+K
Sbjct: 191 HKASLLFDYMIDCVATIDTKTKERFEECYNEIK 223


>AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.15 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 266 HYVPLMYIYIYKCIVYIDIICTTRYSNIYNEVK 168
           H   L++ Y+  C+  ID     R+   YNE+K
Sbjct: 191 HKASLLFDYMIDCVATIDTKTKERFEECYNEIK 223


>AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical
           protein F45D11.14 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 266 HYVPLMYIYIYKCIVYIDIICTTRYSNIYNEVK 168
           H   L++ Y+  C+  ID     R+   YNE+K
Sbjct: 198 HKASLLFDYMIDCVATIDTKTKERFEECYNEIK 230


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 421 N*NFFFSQYNNIGSKVSQ*QSKTLANRFFFFFEIIESTGI 302
           N + FF + NN+G  + +   +TLAN   F F  + +T +
Sbjct: 314 NSSLFFGEENNLGMIIQKTPKRTLANFLIFHFIDVMTTDL 353


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 275 FHFHYVPLMYIYIYKCIVYIDI--ICTTRYSNIYNEVKQTSKEKQL 144
           F F+ +   YI I   IV ID+  IC  R+  +Y + K  +K KQ+
Sbjct: 165 FSFYAIFCKYISIIFIIVLIDVFVICKARF--MYKKSKNDAKSKQM 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,258,239
Number of Sequences: 27780
Number of extensions: 136967
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)