Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30450
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21600.1 68417.m03128 bifunctional nuclease, putative similar...    28   3.1  
At4g21585.1 68417.m03124 bifunctional nuclease, putative similar...    27   5.5  
At5g50240.1 68418.m06222 protein-L-isoaspartate O-methyltransfer...    26   9.5  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    26   9.5  

>At4g21600.1 68417.m03128 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 296

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 68  FMATNMYVVSESENYRNLINYRFDQIIVFLSTFV 169
           F  TN  ++S SEN +N+++Y   + ++FLS ++
Sbjct: 114 FNYTNQ-LMSASENSQNIVHYNLTEALLFLSHYM 146


>At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 299

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 83  MYVVSESENYRNLINYRFDQIIVFLSTFV 169
           M ++S SEN   +++Y   + ++FLS F+
Sbjct: 121 MQLMSASENSDTIVHYNLTEALMFLSHFI 149


>At5g50240.1 68418.m06222 protein-L-isoaspartate
           O-methyltransferase, putative / PIMT, putative similar
           to SP|Q42539 Protein-L-isoaspartate O-methyltransferase
           (EC 2.1.1.77) (Protein- beta-aspartate
           methyltransferase) (PIMT) (Protein L-isoaspartyl
           methyltransferase) (L-isoaspartyl protein carboxyl
           methyltransferase) {Arabidopsis thaliana}; contains Pfam
           profile PF01135: Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase (PCMT)
          Length = 269

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 309 VDSIISKKKKNRFANVLLC 365
           +D II K+KK   A VLLC
Sbjct: 18  IDKIIKKRKKKMRAQVLLC 36


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 239 IYKCIVYIDIICTTRYSNIYNEVKQTSKEKQL 144
           + K   ++D++ TT+  NI  E    + EK+L
Sbjct: 158 VIKVYSFVDLVTTTKKGNIQTEESSLNHEKKL 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,377,183
Number of Sequences: 28952
Number of extensions: 112723
Number of successful extensions: 223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)