Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30449
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   142   1e-35
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   141   2e-35
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    37   6e-04
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   3.1  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   3.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    23   9.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  142 bits (343), Expect = 1e-35
 Identities = 65/85 (76%), Positives = 77/85 (90%)
 Frame = +1

Query: 1   ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLV 180
           ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+IRRLV
Sbjct: 22  ARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLV 81

Query: 181 RIGVLDEKQMKLDXVLGLKIEDFLD 255
           R+G+LDE +MKLD VL L+IEDFL+
Sbjct: 82  RLGILDESRMKLDYVLALRIEDFLE 106



 Score = 31.5 bits (68), Expect = 0.027
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 249 LGRRLQTQVFKAGLAKS 299
           L RRLQTQVFK GLAKS
Sbjct: 105 LERRLQTQVFKLGLAKS 121


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  141 bits (342), Expect = 2e-35
 Identities = 65/85 (76%), Positives = 77/85 (90%)
 Frame = +1

Query: 1   ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLV 180
           ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+IRRLV
Sbjct: 22  ARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLV 81

Query: 181 RIGVLDEKQMKLDXVLGLKIEDFLD 255
           R+G+LDE +MKLD VL L+IEDFL+
Sbjct: 82  RLGILDETRMKLDYVLALRIEDFLE 106



 Score = 31.5 bits (68), Expect = 0.027
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 249 LGRRLQTQVFKAGLAKS 299
           L RRLQTQVFK GLAKS
Sbjct: 105 LERRLQTQVFKLGLAKS 121


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 37.1 bits (82), Expect = 6e-04
 Identities = 21/87 (24%), Positives = 41/87 (47%)
 Frame = +1

Query: 13  QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVRIGV 192
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N L+ +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 193 LDEKQMKLDXVLGLKIEDFLDVVCRRR 273
           L  K    D    ++ +  +  +CRRR
Sbjct: 88  LPSKSKMSD----IENKANVSAICRRR 110


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 67   RVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVRIGVLDEKQMKLDXVLGL 234
            R++YT  R+R  AR+ LT        LF   + ++    + +L++KQ +   +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 273 PASADDVQEVLNLQTKHXIEF 211
           PAS D+V+ V +LQT+   EF
Sbjct: 239 PASKDEVRTVRSLQTEELEEF 259


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +1

Query: 190 VLDEKQMKLDXVLGLKIEDFLDVVCRRRCSKLAWRS 297
           ++ E+    + ++  + EDF  + C R    L WR+
Sbjct: 336 LMKERFSYFEKIIKSRQEDFSKLSCTRASPMLVWRA 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,687
Number of Sequences: 5004
Number of extensions: 16521
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)