Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30449
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 114 1e-26
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 114 1e-26
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 114 1e-26
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 85 1e-17
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 1.2
07_03_1358 - 25984897-25984997,25985623-25985650 27 2.7
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 26 6.3
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 26 6.3
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 25 8.3
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 114 bits (275), Expect = 1e-26
Identities = 53/83 (63%), Positives = 68/83 (81%)
Frame = +1
Query: 4 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+FEG AL+RR+ R
Sbjct: 25 RLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNR 84
Query: 184 IGVLDEKQMKLDXVLGLKIEDFL 252
G+L + Q KLD VL L +E+FL
Sbjct: 85 YGLLADGQNKLDYVLALTVENFL 107
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 249 LGRRLQTQVFKAGLAKS 299
L RRLQT VFKAG+AKS
Sbjct: 107 LARRLQTLVFKAGMAKS 123
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 114 bits (275), Expect = 1e-26
Identities = 53/83 (63%), Positives = 68/83 (81%)
Frame = +1
Query: 4 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+FEG AL+RR+ R
Sbjct: 48 RLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNR 107
Query: 184 IGVLDEKQMKLDXVLGLKIEDFL 252
G+L + Q KLD VL L +E+FL
Sbjct: 108 YGLLADGQNKLDYVLALTVENFL 130
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 249 LGRRLQTQVFKAGLAKS 299
L RRLQT VFKAG+AKS
Sbjct: 130 LARRLQTLVFKAGMAKS 146
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 114 bits (275), Expect = 1e-26
Identities = 53/83 (63%), Positives = 68/83 (81%)
Frame = +1
Query: 4 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+FEG AL+RR+ R
Sbjct: 241 RLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNR 300
Query: 184 IGVLDEKQMKLDXVLGLKIEDFL 252
G+L + Q KLD VL L +E+FL
Sbjct: 301 YGLLADGQNKLDYVLALTVENFL 323
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 249 LGRRLQTQVFKAGLAKS 299
L RRLQT VFKAG+AKS
Sbjct: 323 LARRLQTLVFKAGMAKS 339
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 85.0 bits (201), Expect = 1e-17
Identities = 47/88 (53%), Positives = 60/88 (68%)
Frame = +1
Query: 4 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P+R+FEG AL+R + R
Sbjct: 25 RPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEALLRHMNR 73
Query: 184 IGVLDEKQMKLDXVLGLKIEDFLDVVCR 267
G+L E Q KLD VL L +E+FL CR
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQ--CR 99
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 13 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 135
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 4 RLDQELKIIGEYG 42
RLD ELK++GEYG
Sbjct: 25 RLDAELKLVGEYG 37
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 25.8 bits (54), Expect = 6.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 KREVWRVKYTLARIRKAARELL-TLEEKDPKRLFEGNALIRRLVRIGVLDEKQMKLDXVL 228
KR R+ L R ++ARE L +EE+ K + E + L R L I E +
Sbjct: 597 KRSTERLVNDLTRSARSAREKLEAIEERSEKIMRESDHLRRSLSSIMSQTEHLATASEDV 656
Query: 229 GLKIEDFLD 255
+I D LD
Sbjct: 657 RARIGDVLD 665
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 72 DAPYFTLVAETVLSDDLQLLVKAC 1
D PYF+L A ++D ++LVK C
Sbjct: 1017 DTPYFSLDACCFINDIQEVLVKLC 1040
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 55 REVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRL 177
+ V ++Y +IR A EL DPK + + +L+ L
Sbjct: 593 KSVQAIRYQTPQIRSALLELEKASTDDPKAVSDAQSLVTAL 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,129,924
Number of Sequences: 37544
Number of extensions: 116956
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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