Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30449
(301 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 6e-38
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 27 2.8
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 26 6.5
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18) 25 8.6
SB_33998| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-19) 25 8.6
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 152 bits (368), Expect = 6e-38
Identities = 73/84 (86%), Positives = 80/84 (95%)
Frame = +1
Query: 4 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKDP+RLFEGNAL+RRLVR
Sbjct: 21 RLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNALLRRLVR 80
Query: 184 IGVLDEKQMKLDXVLGLKIEDFLD 255
IGVLDE + KLD VLGL+IEDFL+
Sbjct: 81 IGVLDESRKKLDYVLGLRIEDFLE 104
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 249 LGRRLQTQVFKAGLAKS 299
L RRLQTQVFK GLAKS
Sbjct: 103 LERRLQTQVFKLGLAKS 119
>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 97 KAARELLTLEEKDPKRLFEGNALIRRLVRIGVLDEKQMKL 216
++A ELL EK+ KRL E NA + R V++ +++KL
Sbjct: 24 RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 7 LDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 141
L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 65 LSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 7 LDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 141
L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 5 LSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 1 ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAA 105
A +D+ELK I L+N+ V ++Y+ RKAA
Sbjct: 513 AEIDEELKTIKLLDLKNQTVVLPMQYSPRTTRKAA 547
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 60 SMARQIHARSYP*GCS*APHPRGEGPQEIVR 152
S RQIH P P +G GPQE VR
Sbjct: 249 SRRRQIHNGGIPGTSGSGPRAQGMGPQEGVR 279
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 7 LDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRL 177
L ++ ++ E R ++E W + + + K REL T E + E N LI L
Sbjct: 1839 LAEKSRLESELAARVRQEAWGKQEQIYTLEKEVRELKTSNEGYIRSNDEKNVLISEL 1895
>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
Length = 427
Score = 25.4 bits (53), Expect = 8.6
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 10 DQELKIIGEYGLRNKREVWRVKYTLARIR-KAARELLTLEEKDPKRLFEGNALIRRLVRI 186
++ +K + +YG N R + RI ++ L + +K+P R+F N L L +
Sbjct: 325 EETVKTLRKYGAVNVRIHCFNQSGHPRIATESLLPLASTYDKNPNRIFNTNNLWVNLKAV 384
Query: 187 GVLDEKQ-MKLDXVLGLKIEDFLD 255
L EKQ M ++ ++ KI F+D
Sbjct: 385 KRLVEKQAMDMEIIVNKKI--FID 406
>SB_33998| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-19)
Length = 331
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 52 KREVWRVKYTLARIRKAARELLTL 123
+RE+W + + R RKA+ E+LTL
Sbjct: 308 RREMWAMIRCVKRKRKASTEVLTL 331
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 199 EKQMKLDXVLGLKIEDFLDVVCRRRCSKLAWR 294
EK KLD +LG K++ +V +R ++ W+
Sbjct: 89 EKIKKLDKILGEKVKKEKEVKSQRHMNEKMWK 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,609
Number of Sequences: 59808
Number of extensions: 132032
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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