Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30449
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   152   4e-38
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    27   3.3  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  152 bits (369), Expect = 4e-38
 Identities = 70/84 (83%), Positives = 81/84 (96%)
 Frame = +1

Query: 4   RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
           RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTLE+KDPKRLFEGNAL+RRLV+
Sbjct: 23  RLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVK 82

Query: 184 IGVLDEKQMKLDXVLGLKIEDFLD 255
           IGVLDE +MKLD VLGLK+EDFL+
Sbjct: 83  IGVLDETKMKLDYVLGLKVEDFLE 106



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 249 LGRRLQTQVFKAGLAKS 299
           L RRLQTQVFK GLAKS
Sbjct: 105 LERRLQTQVFKLGLAKS 121


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +1

Query: 124 EEKDPKRLFEGNALIRRLVRIGVLDEKQMKLDXVLGLKIEDFLDVVCRRRCSKLAWRSP 300
           E+KD + +   +A   ++V+I    EK+ K D   G+K E+ +  V RRR S  + R P
Sbjct: 237 EQKDDESMDAEDAKEEKVVQI----EKEKKEDKDDGVKKEEKVREVSRRRVSSPSSRHP 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,885,892
Number of Sequences: 27780
Number of extensions: 94298
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)