Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30449
         (301 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   128   9e-31
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   126   2e-30
At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containi...    27   1.8  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    27   2.3  
At1g01990.1 68414.m00117 expressed protein                             27   3.1  
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to...    25   7.1  
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi...    25   7.1  
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    25   9.4  
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea...    25   9.4  
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea...    25   9.4  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  128 bits (308), Expect = 9e-31
 Identities = 57/84 (67%), Positives = 73/84 (86%)
 Frame = +1

Query: 4   RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
           RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P+R+FEG AL+RR+ R
Sbjct: 25  RLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNR 84

Query: 184 IGVLDEKQMKLDXVLGLKIEDFLD 255
            G+LDE Q KLD VL L +E+FL+
Sbjct: 85  YGLLDESQNKLDYVLALTVENFLE 108



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 249 LGRRLQTQVFKAGLAKS 299
           L RRLQT VFK+G+AKS
Sbjct: 107 LERRLQTIVFKSGMAKS 123


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  126 bits (305), Expect = 2e-30
 Identities = 58/84 (69%), Positives = 73/84 (86%)
 Frame = +1

Query: 4   RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVR 183
           RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARELLTL+EK+P+R+FEG AL+RR+ R
Sbjct: 25  RLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNR 84

Query: 184 IGVLDEKQMKLDXVLGLKIEDFLD 255
            G+LDE Q KLD VL L +E+FL+
Sbjct: 85  YGLLDETQNKLDYVLALTVENFLE 108



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 249 LGRRLQTQVFKAGLAKS 299
           L RRLQT VFK+G+AKS
Sbjct: 107 LERRLQTIVFKSGMAKS 123


>At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 76  YTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVRIGVLDEKQMKLD 219
           +TL  I KA R +  LE+     +F  NALI    ++  +D+    LD
Sbjct: 135 FTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLD 182


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 34  EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRL 177
           +YG+ NKR V  + +T   +R    E+L ++     +  E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646


>At1g01990.1 68414.m00117 expressed protein
          Length = 245

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/76 (25%), Positives = 39/76 (51%)
 Frame = +1

Query: 67  RVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVRIGVLDEKQMKLDXVLGLKIED 246
           R++ +   +  A REL  + E+DP R+ E + ++  L+ I  L + ++ +D      ++ 
Sbjct: 148 RIRLSAEWLETARRELEEVVERDPGRVMEYSQVVDELMEI--LRDMEVYIDKCQKDNVKG 205

Query: 247 FLDVVCRRRCSKLAWR 294
           +L     R C++L  R
Sbjct: 206 YL-----RSCNRLLAR 216


>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
           glutamine synthetase, chloroplast precursor (glutamate--
           ammonia ligase, GS2) [Arabidopsis thaliana]
           SWISS-PROT:Q43127
          Length = 430

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 16  ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 132
           E ++    G+     VW  +Y L RI + A  +LTL+ K
Sbjct: 257 EFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPK 295


>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 570

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 157 NALIRRLVRIGVLDEKQMKLDXVLGLKIEDFLDVVC 264
           + LI  L R G+LDE +  +D + G   E  + V C
Sbjct: 420 SCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYC 455


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/89 (21%), Positives = 40/89 (44%)
 Frame = +1

Query: 13  QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALIRRLVRIGV 192
           +E +I   Y + ++ +  +       ++K    +  ++  DP R+   + L+ +L  +GV
Sbjct: 27  RENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGV 86

Query: 193 LDEKQMKLDXVLGLKIEDFLDVVCRRRCS 279
           +  ++  L     L +  F    CRRR S
Sbjct: 87  IPTRK-SLTLTERLSVSSF----CRRRLS 110


>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 251 WTSSADAGVQSWPGEV 298
           W ++ D+ V+ WP EV
Sbjct: 352 WVATTDSSVERWPAEV 367


>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 251 WTSSADAGVQSWPGEV 298
           W ++ D+ V+ WP EV
Sbjct: 352 WVATTDSSVERWPAEV 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,641,599
Number of Sequences: 28952
Number of extensions: 90968
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)