Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30447
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    29   0.53 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   3.7  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.7  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   3.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   4.9  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   4.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   4.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   4.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   4.9  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   6.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.5  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 418 ILKKFSLRFSHRSLYCLDLIFILLYGIFSILSSPK 314
           ++++ S R+ H  L  +DLI +L   IFS +SSP+
Sbjct: 807 LVQQDSNRYLHPLLSVMDLINLLYTDIFSTISSPR 841


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 154 TNPILEVAVQGRKLGLTKKGKSI 222
           T P +EVAV GR LGL   G  +
Sbjct: 120 TKPEVEVAVAGRVLGLRTAGNKL 142


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 1   EESLNRAILKRSNEFNNT 54
           EESLNR I KRS+  N+T
Sbjct: 440 EESLNRHISKRSSNSNDT 457


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 473 IKLEYFYTEIPHVSLDCPDSKEIFFEIFPSVSI 375
           I++EY Y++I    +D   S+ +F E FP + +
Sbjct: 130 IEIEYEYSKILPEVIDLDLSRNLFHEFFPILKL 162


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 116 YFPSDFISENVIEDW*NFGALVLLNSLLLFKIALFND 6
           Y P DFI +N+   + N   L  L  ++L  I++F +
Sbjct: 95  YTPIDFIPKNIFLQFQNVANLFFLFLVILQSISIFGE 131


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 258 IYKIFLKLLNRNKELK-VSIFGDESIENIPYNKMKIKSKQYRDRWENLKENFFRI 419
           + K  LK LN  +         + S+E+IP +++     ++R R+E  K  F R+
Sbjct: 246 VQKGILKTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYETKKATFNRL 300


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 113 FPSDFISENVIEDW*NFGALVLLNSLLLFK 24
           FP+DFISE V +    F  L +L +LL  K
Sbjct: 549 FPADFISEGVDQTRGWFYTLTVLGTLLFDK 578


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 312 IFGDESIENIPYNKMKIKSKQYRDRWENLKENF 410
           +F D S EN  +++ + KSK  + ++E ++ ++
Sbjct: 529 VFSDTSDENDKFHRFRTKSKISKKKYEKMEVDY 561


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -2

Query: 107 SDFISENVIEDW*NFGALVLLN 42
           ++ I++N++ DW N+G + ++N
Sbjct: 354 AEIIAKNILGDWINYGLVEVIN 375


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 285 NRNKELKVSIFGDESIEN 338
           N N+EL     GDES+EN
Sbjct: 645 NENRELSEDYSGDESLEN 662


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 421  QILKKFSLRFSHRSLYCLDLIFILLYGIFSIL 326
            Q L++FS+R++HR       +  + + IF++L
Sbjct: 1475 QFLERFSMRYTHRWRNLGIFVGYVFFNIFAVL 1506


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 463 SIFTQKSHMSALTV---QILKKFSLRFSHRSLYCLDLIFILLYGIFSILS 323
           S+ + KS +S+ T+    ++  FS+  S   +  + + F L++GIF+ +S
Sbjct: 41  SLISSKSLLSSETLGWFSVICAFSITGSGLEVNTMSIPFYLIFGIFAFVS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,477
Number of Sequences: 5004
Number of extensions: 38817
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)