Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30447
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)               28   5.1  
SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)                       27   8.9  

>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 291 NKELKVSIFGDESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVK 431
           +KE +   +GDE  E+  Y + K K ++Y D+  N+K    +   +K
Sbjct: 16  DKEYEYEKYGDEEYEDKKYEEEKYKEEEYEDKDWNMKSKNMKTKNIK 62


>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 333 ENIPYNKMKIKS-KQYRDRWENLKENFFRIWTVKADMW 443
           E++ Y +MKIKS      RWE     F+RIWT     W
Sbjct: 419 ESVKYVEMKIKSFPTATKRWELTFCPFYRIWTHCTVTW 456


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 73  QSSITFSDIKSEGKY-RPAPGSIVWINLT--NPILEVAVQGRKLGLT 204
           QS++TFSDI ++  +  PAP   +  +LT   P+    +QG   G+T
Sbjct: 116 QSTVTFSDITNQNAHPSPAPIQNLTSSLTASQPVYHTPMQGGSNGVT 162


>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 279 LLNRNKELKVSIFG-DESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKADMWDF 449
           L+  N   KV+ FG    IE+  YN  +    ++  +W   +   F  +T+K+D+W F
Sbjct: 386 LVGENYACKVADFGLARLIEDDEYNPHQ--GAKFPIKWTAPEAALFNRFTIKSDVWSF 441


>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
          Length = 593

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 119 LYFPSDFISENVIEDW*NFGALVLLNSLLLFKIALFNDS 3
           +YFP DFI   V   W     L LL SLLL  I ++ DS
Sbjct: 166 VYFP-DFIKHAVAVSWMGAFCLSLLGSLLLIAI-VYTDS 202


>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 269 YFVYVYLLIISDASGEIDFPFFVKPSFL 186
           +F Y  L I+ D   EID PF++   FL
Sbjct: 222 WFPYFVLTILDDLKFEIDIPFWLTVMFL 249


>SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)
          Length = 264

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   EESLNRAILKRSNEFNN-TRAPKFYQSSITFSDIKSEGKYR 120
           E  + RA+  RS+E ++ T + + YQS++  +D   + KYR
Sbjct: 163 ELPVTRAVYNRSSETSDETASAEMYQSAMYDADTNEKRKYR 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,305
Number of Sequences: 59808
Number of extensions: 241431
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)