Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30447
         (507 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053655-1|AAH53655.1|  655|Homo sapiens FYVE, RhoGEF and PH dom...    30   4.0  
BC023645-1|AAH23645.1|  655|Homo sapiens FYVE, RhoGEF and PH dom...    30   4.0  
AL160264-1|CAI20471.1|  697|Homo sapiens FYVE, RhoGEF and PH dom...    30   4.0  
AK097230-1|BAC04982.1|  180|Homo sapiens protein ( Homo sapiens ...    30   4.0  

>BC053655-1|AAH53655.1|  655|Homo sapiens FYVE, RhoGEF and PH domain
           containing 2 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 91  SDIKSEGKYRPAPGSIVWIN----LTNPILEVAVQGRKLGLTKKGKSISPDASLIIS 249
           SD ++E KY     + V ++    LT  +L  A + ++ G+ +KG S +PD SL+ S
Sbjct: 493 SDYRAELKYDDNRPNRVCLHCYAFLTGNVLPEAKEDKRRGILEKGSSATPDQSLMCS 549


>BC023645-1|AAH23645.1|  655|Homo sapiens FYVE, RhoGEF and PH domain
           containing 2 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 91  SDIKSEGKYRPAPGSIVWIN----LTNPILEVAVQGRKLGLTKKGKSISPDASLIIS 249
           SD ++E KY     + V ++    LT  +L  A + ++ G+ +KG S +PD SL+ S
Sbjct: 493 SDYRAELKYDDNRPNRVCLHCYAFLTGNVLPEAKEDKRRGILEKGSSATPDQSLMCS 549


>AL160264-1|CAI20471.1|  697|Homo sapiens FYVE, RhoGEF and PH domain
           containing 2 protein.
          Length = 697

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 91  SDIKSEGKYRPAPGSIVWIN----LTNPILEVAVQGRKLGLTKKGKSISPDASLIIS 249
           SD ++E KY     + V ++    LT  +L  A + ++ G+ +KG S +PD SL+ S
Sbjct: 535 SDYRAELKYDDNRPNRVCLHCYAFLTGNVLPEAKEDKRRGILEKGSSATPDQSLMCS 591


>AK097230-1|BAC04982.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39911 fis, clone SPLEN2018181, highly similar to
           Mus musculus faciogenital dysplasia protein 2 (Fgd2)
           mRNA. ).
          Length = 180

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 91  SDIKSEGKYRPAPGSIVWIN----LTNPILEVAVQGRKLGLTKKGKSISPDASLIIS 249
           SD ++E KY     + V ++    LT  +L  A + ++ G+ +KG S +PD SL+ S
Sbjct: 70  SDYRAELKYDDNRPNRVCLHCYAFLTGNVLPEAKEDKRRGILEKGSSATPDQSLMCS 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,836,246
Number of Sequences: 237096
Number of extensions: 1159163
Number of successful extensions: 2013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2013
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)