Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30446
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    30   0.36 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    29   0.48 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   5.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   5.9  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   7.9  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 257 IATLRTVLXSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTDSVIKTT 427
           + +L T+L   +R +SDL  + G+    +I + +N  ++N     ES  +  + SVIK  
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235

Query: 428 AEKTSSII 451
            ++  S++
Sbjct: 236 FKEHESVL 243


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +2

Query: 332 VWKEITEDVNQGLKNVKESQVYQKTDSVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESS 511
           +++++ E  N+G +++  S ++  T  + +   EK +  IG     +SSKL  M      
Sbjct: 171 LYQDLKELYNEGFRSISVSLMHSYTYPLHEEVVEKIAKRIGFTDISLSSKLTPMVKIVPR 230

Query: 512 APSKNASARLMKTSR 556
           A S    A L  T R
Sbjct: 231 AVSAIIDAYLSSTLR 245


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -2

Query: 295 TDLAXQYSSQSRDLSSTRASSRLHSARNWSACSG----VRPANSSGVCMSPATPVPDIAS 128
           T  + QY++ S   SST +S+ L SA + +A S     +   NS+    + +TP+  ++S
Sbjct: 270 TSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSS 329

Query: 127 S 125
           +
Sbjct: 330 A 330


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 463 GRRLQQARSDAQLGVFRSIEERVGSAYENVKGKVASRSNSTQSFDEALR 609
           G     ARS +Q+   + +++ + ++ E VK      SNS +   +  R
Sbjct: 740 GLNATHARSTSQVSHTQRLQQSISTSLERVKSNTKKESNSPRQVSKLKR 788


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 532 GSAYENVKGKVASRSNSTQSFDEALRDASGATSPPI 639
           GS+ EN       R+N++ SFD  L D+S  T+P I
Sbjct: 302 GSSIENNFLYTKRRANTSDSFDSVLSDSS--TTPTI 335


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 595 DEALRDASGATSPPIPEH 648
           D A++DA GAT+P  P H
Sbjct: 394 DHAMKDACGATNPIQPTH 411


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 250 KINRDFENCTAKQDPSK--LGLKT*TWHHGVERDHRGRQSGFEKRQRKPSIPKN*LCDKN 423
           K +RD+ +   +++     +G +    H+G ER  R R+   + R+ + S  ++   D+ 
Sbjct: 16  KRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYREDER 75

Query: 424 DRREDVFD 447
            RRE  +D
Sbjct: 76  PRRERRYD 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,298
Number of Sequences: 5004
Number of extensions: 46437
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)