Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30446
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 31 0.87
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 31 0.87
04_01_0127 + 1368763-1369276,1385539-1385742,1386221-1386444,138... 29 2.6
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 29 2.6
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 29 4.6
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 28 6.1
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 28 6.1
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 6.1
06_01_0567 - 4004743-4004957,4005565-4005649,4006292-4006478,400... 28 8.1
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 415 DKNDRREDVFDHRRHHGRRLQQARSDAQLGVFRSIEERVGSAYENVKGKVASRSNSTQSF 594
D ND++ED+ ++ R+L A + +F R G + + G++A R +S SF
Sbjct: 570 DVNDQKEDIGKKKKDRTRKLHAALLSLSVAIFEK-RIRDGKDLDTLAGEIA-RGDSASSF 627
Query: 595 DEALR 609
LR
Sbjct: 628 VGKLR 632
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 541 YENVKGKVASRSNSTQSFDEALRDASGATSPPIPEHKPLP 660
YE VK +++ T+S A G SPP+P + P
Sbjct: 352 YEEVKDSPTEQTDKTKSSSNATASTEGRKSPPVPNERKDP 391
>04_01_0127 +
1368763-1369276,1385539-1385742,1386221-1386444,
1386520-1386707,1394955-1394970
Length = 381
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +1
Query: 250 KINRDFENCTAKQDPSKLGLKT*TWHHGVERDHRGRQSGFEKRQRKPSIPKN*LCDKNDR 429
++N E+CTA + GL H ++ R G+ RQRK ++ LC K D
Sbjct: 297 EMNEFGESCTAVESLFVWGLAV---HMSAKKSVLERLDGYWLRQRKA---EDDLCHKEDE 350
Query: 430 REDVFDHRRHHGRRLQQARSDAQ 498
R V D R + R+D +
Sbjct: 351 RRVVADTLRRPNAENRSLRADLE 373
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/118 (21%), Positives = 48/118 (40%)
Frame = +1
Query: 247 SKINRDFENCTAKQDPSKLGLKT*TWHHGVERDHRGRQSGFEKRQRKPSIPKN*LCDKND 426
++ + DFE+ S+ + ++ + D S +EK +R S + LC+
Sbjct: 147 AEFHGDFEDRYRSSHQSREDSREDSYERDRDYDRYSYDSDYEKSRRDGSWRRRDLCESEH 206
Query: 427 RREDVFDHRRHHGRRLQQARSDAQLGVFRSIEERVGSAYENVKGKVASRSNSTQSFDE 600
R + H R +Q +RS ++ R R S + +GK R+ +D+
Sbjct: 207 ERRGL-SHERDRSPYMQHSRSRSR---GRDERSRSRSRSRSPRGKSRGRNQRDGFYDD 260
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 429 AVVFITESVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLXSTVL 268
AV + SV++ W + ++F+P L SSV+ VM ++ F ILL VL
Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330
>05_05_0034 -
21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 328 HGVERDHRGRQSGFEKRQRKPSIPKN*LCDKNDRREDVFDHRRHHGRRLQQARSDAQLGV 507
HGV+RD R + + + Q KP ++ LC V HG+ L S G+
Sbjct: 441 HGVQRDQSSRTNSWYRNQEKPVNAESSLCSVTKSSVQV-----EHGQELHMENSPE--GL 493
Query: 508 FRSIEERV 531
F I ++
Sbjct: 494 FFGINSKL 501
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 293 RQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTDSVIKTTAEKTS-SIIGGITAG 469
+QS + +TED+++ L+ ++++ Y ++ V +A S GG AG
Sbjct: 1488 KQSHSRSNSNSSVQFNSLTEDLHE-LRTLRDALDYDRSALVRYFSAASASFPTKGGAAAG 1546
Query: 470 VSSKLGQMRNSESSAPSK 523
V ++G R + P K
Sbjct: 1547 VEKRIGGARFPQCKQPGK 1564
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 398 QKTDSVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESSAPSKNASARLMK 547
Q +++KTT E S + ++S+LG ++++ S +NA A L+K
Sbjct: 2309 QVVKAMMKTTKEVQSYKFIPLVYQIASRLGSSKDAQGSTNFQNALASLLK 2358
>06_01_0567 -
4004743-4004957,4005565-4005649,4006292-4006478,
4006586-4006701,4006792-4006974
Length = 261
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 338 KEITEDVNQGLKNVKESQV--YQKTDSVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESS 511
+E E ++Q L++ +ES + + T S IK T GG + ++ +G R S
Sbjct: 80 REAKERLDQKLRSQRESVIKRHHSTGS-IKLNRGATGGGGGGGRSTATAAMGVQREVYSR 138
Query: 512 APSKNASARLMKTSRVKW 565
K RLM+ SR++W
Sbjct: 139 ---KGVMRRLMRWSRLRW 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,555
Number of Sequences: 37544
Number of extensions: 302701
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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