Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30446
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 58 7e-09
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17) 31 1.2
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 3.6
SB_42677| Best HMM Match : TUDOR (HMM E-Value=0) 29 4.7
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22) 29 4.7
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 28 6.2
SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +2
Query: 257 IATLRTVLXSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK-------TDSV 415
I TL+ L K Q +DLKR+LGIT W +I E + V++S+ Y K T V
Sbjct: 80 ITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQGASATKVV 139
Query: 416 IKTTAEKTSSIIGGITAGVSSKLGQMRNSES 508
+ +EKT S + ++ + KLG++R S S
Sbjct: 140 LVDASEKTVSAVKTASSATAKKLGEIRQSNS 170
>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
Length = 722
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 371 KNVKESQVYQKT--DSVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESSAPSKNASARLM 544
K VK+ + KT + V +TT+ S+ GG ++ S+ + + SS+P + S+ L
Sbjct: 458 KLVKKGSLKSKTGKEQVKRTTSGSHPSLAGGASSSKQSQKSSVTSKSSSSPKSSPSSSLQ 517
Query: 545 KTSRV 559
+ +
Sbjct: 518 RLPNI 522
>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 25 CSITFLKKYKLNIFHSFNTVRVFHCKI*AVFKQLKKQCQAPEWQGTYI 168
CS FLKKY+ N N R F K + + ++ C WQ I
Sbjct: 691 CSGNFLKKYRKNRGSFKNCKRFFEAKR-CMLQAVESNCNTSRWQQAMI 737
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 535 SAYENVKGKVASRS-NSTQSFDEALRDASGATSPPIPEHK 651
S+++ K K SR NST+ E D S A+ P PE K
Sbjct: 22 SSHKPKKSKKKSRQGNSTEKLKEQYEDISSASEEPEPERK 61
>SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 1150
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 284 SKIRQSSDLKRKLGITVWKEITEDVNQGLKNVK-ESQVYQKTDSVIKTTAEKTSSIIGGI 460
+ +++ + LK + + V E ++++ +N+ S Y S+ T+ +
Sbjct: 162 TNLKEHASLKDENNLVVRDENEKEISSESRNITVPSTKYHDHKSITNEEGLSTALKQKSV 221
Query: 461 TAGVSSKLGQMRNSESSAPSKNASARLMKTSRVK 562
++ + K R ESS + S++ MKTS VK
Sbjct: 222 SSSIQGKSTSSRE-ESSCKRTSPSSKSMKTSAVK 254
>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
Length = 431
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 328 HGVERDHRGRQSGFEKRQRKPSIPKN*LCDKND 426
HG RG Q+ +KR P +PK+ + K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -2
Query: 301 ALTDLAXQYSSQSRDLSSTRASSRLHSARNWSACSGVRPANSSGVCMSPATPVPDIASSA 122
A +D+A ++ S SS ASS + S+ + S+ S + A+S S DIASSA
Sbjct: 66 ASSDIASSANASSAKTSSASASSNIASSASASSAS-MSSASSLSASASSNIASSDIASSA 124
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 550 RFHKPSRRVLRWSGRLRVAHL 488
R H S R LRWSG+ V H+
Sbjct: 200 RLHAASMRSLRWSGKRHVVHV 220
>SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -2
Query: 337 PHRDAKFTF*VRALTDLAXQYSSQSRDLSSTRASSRLHSARNWSACS 197
P D + R+L DL+ QYSS+S DLS+ +S L + +S+ S
Sbjct: 527 PSHDFSNQYSSRSL-DLSNQYSSRSLDLSNQYSSRSLDLSNQYSSRS 572
>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -2
Query: 364 LIDVLGDLFPHRDAKFTF*VRALTDLAXQYSSQSRDLSSTRASSRLHSARNWSACS 197
L VL ++FP D + T + + ++ SSQ++D +A S ++ +W CS
Sbjct: 46 LFHVLKEIFP--DGEET---QCVPNIILDNSSQTKDFDEKKAGSNVNKLGSWVQCS 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,991
Number of Sequences: 59808
Number of extensions: 340285
Number of successful extensions: 1224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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