Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30444
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    27   0.87 
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    27   1.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.5  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    25   4.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   6.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   6.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    24   8.1  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    24   8.1  

>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 22  ISKVRSSVENVTKFDEELRKHFTLVVD 102
           ++ VRS+VE + K  EE +++FT  V+
Sbjct: 6   VASVRSNVEQILKGSEEKKRNFTETVE 32


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 25  SKVRSSVENVTKFDEELRKHFTLVVD 102
           + +RSSVE + K  EE +++FT  V+
Sbjct: 7   ANIRSSVETILKGSEEKKRNFTETVE 32


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 113  VSGSSTTSVKCFRNSSSNFVTFSTEDRTLEISC 15
            V+ +S TS+  F  SS N   F  ++RT+ I C
Sbjct: 1889 VNLNSVTSLGNFNGSSPNSFLFLLKNRTMRIKC 1921


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 37  SSVENVTKFDEELRKHFTLVVDDPD--TVYGCITDTWTKFMD 156
           S+ +N   F E+L   FT+ VDD D    Y   + T TK +D
Sbjct: 3   SANKNTKIFAEQLGNDFTISVDDEDMEMEYPLRSSTPTKVID 44


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 185 VSNGSTVRK*SMNLVHVSVIHPYTVSGSSTTSVKCFRNSSS 63
           VSNGS+      N VHV+   P    GS+   +K    S S
Sbjct: 138 VSNGSSYPNIRKNSVHVNAPMPSFPEGSTAVLLKHHSGSKS 178


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 ITDTWTKFMDYFLTVDPLLTYRPVWEKYFYD 219
           +T  W  FM  F+ + P  T   VW+ +FY+
Sbjct: 491 VTAAW--FMSAFVGILPTETALRVWDCFFYE 519


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  ISKVRSSVENVTKFDEELRKHFTLVVDD 105
           + K +SSV N+   +E  + H T+ V+D
Sbjct: 649 LQKKKSSVSNIIYIEEITQSHSTIRVED 676


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 193 PVWEKYFYDALMKFREDNVL 252
           P W+KY    L  FR++N+L
Sbjct: 548 PFWKKYLELQLTMFRQNNML 567


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 119 YTVSGSSTTSVKCFRNSSSNFVTFSTEDRTLEI 21
           +T+SG  T  + C R    N++  S+ D+T+ I
Sbjct: 263 FTLSGH-TAPITCVRWGGQNWIYSSSYDKTIRI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,850
Number of Sequences: 5004
Number of extensions: 34007
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)