Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30444
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    31   0.28 
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107...    27   5.9  
04_03_0521 + 16765347-16767324,16769202-16769392                       27   5.9  
05_04_0246 + 19350362-19350442,19351250-19351383,19351847-193518...    27   7.8  
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049           27   7.8  

>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 37  SSVENVTKFDEELRKHFTLV-VDDPDTVYGCITDTWTKFMDYFLTVDPLLTYRPVWEKY 210
           ++V  V +F E L   +T+  +D PD  +   TD     + +      L+ YRP+W  +
Sbjct: 26  ATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDDGNYLVAFSRNHQDLIVYRPIWPTF 84


>12_01_0138 -
           1069616-1069894,1070056-1070607,1070689-1071046,
           1071214-1071503,1072257-1072360,1072419-1072575,
           1073229-1073273,1073636-1073692
          Length = 613

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 168 SKKVVHELSP--CIRNTSVYCIWIVDHQREMFSQFFIE 61
           +++V HE +P  C     +YC+W V++ +E+   F ++
Sbjct: 130 NQEVEHEENPKSCELEYGIYCLWSVEY-KEVMKDFIVK 166


>04_03_0521 + 16765347-16767324,16769202-16769392
          Length = 722

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 149 NLVHVSVIHPYTVSGSSTTSVKCFRNSSS 63
           ++ + S+IH Y++SG    SV+ F+  SS
Sbjct: 153 SITYNSLIHGYSISGMWNESVRVFKQMSS 181


>05_04_0246 +
           19350362-19350442,19351250-19351383,19351847-19351895,
           19352503-19352667,19353358-19353414,19353524-19353598
          Length = 186

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 40  SVENVTKFDEELRKHFTLVVD----DPDTVYGCITDTWTKFMDYFLTVDPLLTYRPVWEK 207
           ++E + +  + + KH  LV+D      D  Y  +TD W KF D F+  +P L +   +  
Sbjct: 2   NIERLKQLVDLVGKH-RLVLDLSCRKKDGRYAIVTDRWQKFSDVFVD-EPTLKHLAAYAD 59

Query: 208 YF 213
            F
Sbjct: 60  EF 61


>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
          Length = 319

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 26  LKSDPR*KTLRSSMKNCENISRWWSTI 106
           L SDPR + +  + KN   +SRWW+ I
Sbjct: 234 LASDPRSRRMFEARKN---VSRWWNNI 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,198
Number of Sequences: 37544
Number of extensions: 203604
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)