Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30444
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              27   4.6  
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    27   8.1  
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   27   8.1  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -3

Query: 203 SHTGRYVSNGSTVRK*SMNLVHVSVIHPYTVSGSSTTSVKCFRNSSSNFVTFST 42
           S T  Y+++ ST      ++ H S  HPY    S+T       +++  ++T+++
Sbjct: 20  STTHPYITHASTTHP---HIAHASTTHPYITHASTTHHYIVHASTTHPYITYAS 70


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 61  FDEELRKHFTLVVDDPDTVYGCITDTWTKFMDYFLTV 171
           F  EL      V  D DTV  C+T    +FM++ + V
Sbjct: 167 FHVELCSQTPFVYGDEDTVMACLTKESCRFMEHAMHV 203


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 138  CIRNTSVYCIWIVDHQREMFSQFFIELRNVFYRGSDFRNIL 16
            C+R +     WI   + E FS  F+   N  Y GS   N+L
Sbjct: 1710 CVRLSDGKIQWIHKSKGEFFSTAFVAADNRVYVGSGTGNVL 1750


>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 40  SVENVTKFDEELRKHFTLVVDDPDTVYGCITDTWTKFMDYFLTVDPLLT 186
           +++N    DE L    TL +DD  T+   +T   T  +D  LT+D  LT
Sbjct: 48  ALDNTLTLDETLTLVETLTLDDTLTLDDTLTLDDTLTLDDTLTLDDTLT 96


>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 86  KCFRNSSSNFVTFSTEDRTLEISCH 12
           KCF N   NF T +      E +CH
Sbjct: 389 KCFPNPCKNFATCTEHPNDYECTCH 413


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 16  QDISKVRSSVENVTKFDEELRKHF 87
           +D  KVR  +E +T+ +E LRK F
Sbjct: 769 EDTEKVRHEMEGITEENETLRKKF 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,232
Number of Sequences: 59808
Number of extensions: 236940
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)