Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30444
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    31   0.31 
At4g24610.1 68417.m03525 expressed protein                             31   0.41 
At4g10180.1 68417.m01668 light-mediated development protein 1 / ...    29   1.6  
At5g39350.1 68418.m04766 pentatricopeptide (PPR) repeat-containi...    28   2.2  
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR...    28   2.9  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    28   2.9  
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi...    27   3.8  
At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative / ...    26   8.7  

>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 58  KFDEELRKHFTLVVDDPDTVYGCITDTWTKFMDYFLTV 171
           + +EEL K F      P +V G   D+W   MD FLT+
Sbjct: 728 QLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTL 765


>At4g24610.1 68417.m03525 expressed protein 
          Length = 1145

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 191 RYVSNGSTVRK*SMNLVHVSVIHPYTVSGSSTTSVKCFRNSSSNF 57
           R  +NGS++ + S+  VH S  +   VSG   T V   RN+S+++
Sbjct: 351 RVPANGSSLPRQSLAYVHASTQYLKQVSGLLKTGVTSLRNNSTSY 395


>At4g10180.1 68417.m01668 light-mediated development protein 1 /
           deetiolated1 (DET1) identical to Light-mediated
           development protein DET1 (Deetiolated1)
           (Swiss-Prot:P48732) [Arabidopsis thaliana]
          Length = 543

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 37  SSVENVTKFDEELRKHFTLV-VDDPDTVYGCITDTWTKFMDYFLTVDPLLTYRPVWEKY 210
           +SV     F E L   +TL  V+ PD  +   T+     + +      L+ YRP W  Y
Sbjct: 23  ASVNRARHFYENLVPSYTLYDVESPDHCFRKFTEDGLFLISFSRNHQELIVYRPSWLTY 81


>At5g39350.1 68418.m04766 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 677

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 7   GKWQDISKVRSSVENV 54
           G+W+D+ KVRS +ENV
Sbjct: 641 GRWKDMEKVRSMMENV 656


>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1981

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 261 IQLQNVILSKLHQGVIEIFLPHRPVR*QRINSKKV 157
           +QLQN +LSK+     +I +PH  V  +R+  KKV
Sbjct: 276 LQLQNKMLSKMINQK-DIMIPHLGVAQERLKDKKV 309


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 131 VIHPYTVSGSSTTSVKCFRNSSSNFVT-FSTEDRTLEIS 18
           VI P +VSG+      CF N ++N  T F T+++ L I+
Sbjct: 325 VIGPISVSGNPEDHETCFPNFAANVPTSFVTKEKKLNIA 363


>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor
           [GI:3168840][PMID:9701579] and farnesylated proteins
           ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
           contains PF00403 Heavy-metal-associated domain
          Length = 364

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 1   CKGKWQDISKVRSSVENVTKFDEELRKHFTLVV 99
           C+G  + + K+ +S+E V K D ++++H   V+
Sbjct: 50  CEGCKRKVKKILTSIEGVFKVDIDVKQHKVTVI 82


>At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative /
           shikimate dehydrogenase, putative similar to
           dehydroquinate dehydratase/shikimate dehydrogenase
           [Nicotiana tabacum][GI:535771], dehydroquinate
           dehydratase/shikimate:NADP oxidoreductase [Lycopersicon
           esculentum][GI:3169883]
          Length = 603

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 178 LLTYRPVWEKYFYDALMKFREDNV-L*LNLGASY 276
           L TYRP WE   Y+     R D + L + LGA Y
Sbjct: 151 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADY 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,698,003
Number of Sequences: 28952
Number of extensions: 170460
Number of successful extensions: 478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)