Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30442
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 115 3e-27
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 115 3e-27
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 113 1e-26
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 0.84
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 3.4
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 4.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 4.5
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 4.5
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 5.9
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 5.9
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 24 7.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 7.8
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 115 bits (276), Expect = 3e-27
Identities = 48/84 (57%), Positives = 67/84 (79%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI+TVG FK A+NF+WPF
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPF 213
Score = 48.4 bits (110), Expect = 4e-07
Identities = 19/38 (50%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Frame = +1
Query: 253 QLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRRMV 363
QL++P GGWR +K H+++GGD G R++ IN L+R+M+
Sbjct: 214 QLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 115 bits (276), Expect = 3e-27
Identities = 49/84 (58%), Positives = 66/84 (78%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
A ML++ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+ V
Sbjct: 129 AIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSV 188
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI+TVG FK A+NFLWPF
Sbjct: 189 EDLIHEIYTVGPNFKQAANFLWPF 212
Score = 44.8 bits (101), Expect = 5e-06
Identities = 16/38 (42%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Frame = +1
Query: 253 QLNNPTGGWRKKTI-HYVDGGDFGNREDKINDLLRRMV 363
+L++P GGWR++ H+++GGD G R++ IN L+++M+
Sbjct: 213 KLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 113 bits (271), Expect = 1e-26
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
A MLRI EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +
Sbjct: 128 AVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISI 187
Query: 182 XDLIHEIFTVGEKFKYASNFLWPFN*T 262
D+IHEI+ VG FK + FLWPF T
Sbjct: 188 EDIIHEIYNVGSHFKEVTKFLWPFTLT 214
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 0.84
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 56 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH--KHNIICVXDLIHEIFTVGEKFKY 229
N KSV + G L+G +I I+ + ++ R+ K ++ + +L H++ + K+
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVEL-ELSHKVCVISYSAKF 200
Query: 230 ASNFLWPF 253
AS F PF
Sbjct: 201 ASGFFGPF 208
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 249 PSIEQ--SNWWLAQEDHSLCRRGRLW*PRRQDQRSSQED 359
P +E+ + WL ++ H+ + +LW R+DQ S +D
Sbjct: 21 PELERVLKSGWLIKKGHATSTKKQLWAVLRRDQLSFYKD 59
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 4.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 229 VLELFSNSEDLMDEVXNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 50
+L +F+ +D M T+N + +L +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 49 S 47
S
Sbjct: 377 S 377
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 310 PRRHNEWSSCANHQLDCSIEGPQEITRVLELFSNSEDLM 194
P +NE+ +IE P+ ITRV +LF+ +L+
Sbjct: 200 PEIYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYPNLI 238
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 4.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 11 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 142
N +I+ PY GYP +K + L YK KLS +PI + I
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 244 QEITRVLELFSNSEDLMDEVXNTDNVVFMEPLLNNAVGSDWYTLST 107
QE ++ L S+++ L+D ++ M+P+ N+ SD +TL T
Sbjct: 124 QETSKDLCRSSSTQHLLDHQTTDSTIIDMKPVSTNS-KSDVFTLYT 168
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 264 IVQLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLW 157
I +LKGH + + + + PT SS + LW
Sbjct: 127 IAELKGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 255 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 151
L+GH + L +SP + SST +C+W L
Sbjct: 321 LEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 232 RVLELFSNSEDLMDE--VXNTDNVVFMEPLLNN 140
RV E+F +S DL++E + DNV EP N
Sbjct: 300 RVAEIFKDSPDLLEEFKLFLPDNVDSTEPSTPN 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,670
Number of Sequences: 5004
Number of extensions: 34532
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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