Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30442
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 133 4e-32
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 128 2e-30
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 100 9e-22
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 29 1.4
02_03_0120 + 15463163-15465250 29 1.8
02_03_0127 + 15547048-15547302,15547511-15548459,15548562-155486... 28 3.2
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 3.2
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 27 4.3
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 27 5.6
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 27 5.6
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 27 7.5
05_07_0263 + 28775769-28777109 26 9.9
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 133 bits (322), Expect = 4e-32
Identities = 56/84 (66%), Positives = 71/84 (84%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+
Sbjct: 125 ATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICI 184
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DL+HEI TVG FK A+NFLWPF
Sbjct: 185 EDLVHEIMTVGPHFKEANNFLWPF 208
Score = 53.6 bits (123), Expect = 6e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
+L P GG +KK HYV+GGD GNRED IN+L+RRM
Sbjct: 209 KLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 128 bits (308), Expect = 2e-30
Identities = 57/90 (63%), Positives = 72/90 (80%), Gaps = 6/90 (6%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHK 163
AT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L K
Sbjct: 124 ATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGK 183
Query: 164 HNIICVXDLIHEIFTVGEKFKYASNFLWPF 253
H+IIC+ DL+HEI TVG FK A+NFLWPF
Sbjct: 184 HDIICIEDLVHEIMTVGPHFKEANNFLWPF 213
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 214 KLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 99.5 bits (237), Expect = 9e-22
Identities = 42/84 (50%), Positives = 62/84 (73%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L ++ IIC+
Sbjct: 127 ATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICL 186
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DL+HEI +VG F+ ASNFL PF
Sbjct: 187 EDLVHEIASVGPHFREASNFLMPF 210
>05_04_0077 - 17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 277 NHQLDCSIEGPQEITRVLELFSNSEDLMDEVXNTDNVVFMEPLLNNA 137
+H+ GP T +FS EDL+++ + +N+ F PLL+ +
Sbjct: 947 DHEKSAHARGPVTGTNSNAIFSEKEDLIEQ--HLENIHFQHPLLSES 991
>02_03_0120 + 15463163-15465250
Length = 695
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 333 VFAVTKVSP-VDIMNGLLAPTTSWIVQLKGHRKLLAYLNFSPT 208
+F+V P VD+ G+ P T+W+ R+L +L++SP+
Sbjct: 188 IFSVASAQPGVDLKAGV--PITAWVEYRAPRRRLNVWLSYSPS 228
>02_03_0127 +
15547048-15547302,15547511-15548459,15548562-15548677,
15548784-15548890,15550639-15550873,15550957-15551011,
15551802-15551893
Length = 602
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 237 ISCGPSIEQSNWW 275
I C PS++ SNWW
Sbjct: 513 IECNPSLDYSNWW 525
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 34 LHCLGIPQLKECP*VSIQTWIRQAEW 111
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 387 YNYKSI--YLNHPPEKIVDLVFAVTKVSP-VDIMNGLLAPTTSWIVQLK 250
YN++ I N E IVDL+ VT VSP IM + T +QLK
Sbjct: 491 YNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLK 539
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 334 CLRGY--QSLPRRHNEWSSCANHQLDCSIEGPQEITRVLELFSN 209
C +GY QS + H + H DC ++ITR L L+S+
Sbjct: 136 CAKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRKITRSLNLYSD 179
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 234 LAYLNFSPTVKISWMRSSTQIMLCL 160
L++ +F PTV++ +RS T + LCL
Sbjct: 192 LSHCSFRPTVEVVSLRSLTSLDLCL 216
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 234 LAYLNFSPTVKISWMRSSTQIMLC 163
L+ +F PTV +S +RS T++ LC
Sbjct: 254 LSNCSFHPTVTLSGLRSLTRLYLC 277
>05_07_0263 + 28775769-28777109
Length = 446
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 19 TYRRALHCLGIPQLKECP*VSIQTWIRQAEW 111
T R L GI +K+ P VS + W+R+ EW
Sbjct: 345 TPTRVLLYGGIRDVKDGP-VSTEAWVRELEW 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,750
Number of Sequences: 37544
Number of extensions: 222000
Number of successful extensions: 585
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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