Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30442
(406 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 140 3e-34
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13) 29 1.1
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) 28 2.5
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) 27 5.8
SB_12088| Best HMM Match : EGF (HMM E-Value=0.16) 27 5.8
SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07) 27 5.8
SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9) 27 5.8
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 27 7.7
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098) 27 7.7
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 140 bits (340), Expect = 3e-34
Identities = 64/84 (76%), Positives = 71/84 (84%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+ QR+ +T NSIVEK L KH IICV
Sbjct: 125 ATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICV 184
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEIFTVGE FK ASNFLWPF
Sbjct: 185 EDLIHEIFTVGEHFKEASNFLWPF 208
Score = 57.6 bits (133), Expect = 4e-09
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
+L++P GG+RKKT H+V+GGD GNREDKIN L+R M
Sbjct: 209 KLSSPKGGFRKKTTHFVEGGDHGNREDKINGLVRVM 244
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 31.5 bits (68), Expect = 0.27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = -2
Query: 336 LVFAVTKVSPVDIMNGLLAPTTSWIVQLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLW 157
LVF TK NG +P ++LKGH K L+++P V + + +S +CLW
Sbjct: 216 LVFDYTKHPSKPDPNGECSPD----LRLKGHTKEGYGLSWNPNVNGNLLSASDDHTICLW 271
Query: 156 SLFSTMLLEV 127
+ S + +V
Sbjct: 272 DISSGISKDV 281
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -1
Query: 310 PRRHNEWSSCANHQLDCSIEGPQEITRVLELFSNSEDLMDEVXNTDNVVFMEPLLNNAVG 131
P HN ++ ++L S T +E+F +DE V E +LN
Sbjct: 28 PTAHNGANNPRWNKLIASTLPKGVSTIYVEIFDERSFSVDERVAWGLVQIREDVLNGETI 87
Query: 130 SDWYTLSTQLGE 95
DWY+LS + GE
Sbjct: 88 DDWYSLSGKQGE 99
>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
Length = 322
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 271 QLDCSIEGPQEITRVLELFSNSEDLMDEV 185
+LDCSI P+E+ EL +DL D +
Sbjct: 281 ELDCSIRIPEELISYFELCKKKDDLSDSL 309
>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 378 KSIYLNHPPEKIVDLVFAVTKVSPVDIMNG 289
K IYL HP +VD+ AV + VDI +G
Sbjct: 13 KQIYLYHPTPNLVDVSKAVFMGAAVDIRSG 42
>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
Length = 743
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 225 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 49
L++S KI + + +T CLW L ++ GI+ PL +A PR+ ++ L LG
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423
Query: 48 PQ 43
P+
Sbjct: 424 PE 425
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 325 GYQSLPRRHNEWSSCANHQLDCSIEGPQEITRV 227
GY S+P +H+++++ N+ + GP ITRV
Sbjct: 137 GY-SMPTQHHQFNNHTNNHFNMYPRGPPRITRV 168
>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
Length = 354
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 240 KLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVI 124
KL+ + F V I+W T+ + CLW L + + L V+
Sbjct: 12 KLVVTVQFEIRVMITWEVEYTEELRCLWRLQALIDLVVV 50
>SB_12088| Best HMM Match : EGF (HMM E-Value=0.16)
Length = 343
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/57 (21%), Positives = 25/57 (43%)
Frame = -1
Query: 337 SCLRGYQSLPRRHNEWSSCANHQLDCSIEGPQEITRVLELFSNSEDLMDEVXNTDNV 167
SC +L ++ +W CA C + P+ ++ + E F + + TD++
Sbjct: 274 SCWDCTLALQQKKGKWHLCATPLTGCDLRPPEYVSNLWEAFGWYNPMQETFLCTDSL 330
>SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07)
Length = 785
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -1
Query: 292 WSSCANHQLDCSIEGPQEITRVLELFSNSEDLMDEVXNTDNVVFMEPLLNN 140
W + + ++ P + + FS DLM+E+ N V+F+ NN
Sbjct: 289 WPNAGHTHGHSTLAAPMDHPTLFYPFSRVVDLMNELVNEHGVIFISSAGNN 339
>SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)
Length = 1108
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 250 GPQEITRVLELFSNSEDLMDEVXNTDNVVFMEPLLNNAVGSDWYT 116
GP++ TRV FS+S + ++D+ V ++ L + + + +T
Sbjct: 814 GPRDFTRVTRKFSSSTRSSSSIGSSDSQVTVKKALPSPIDNKTFT 858
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 288 LLAPTTSWIVQLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTML 136
++ T+W +G+ LL P V I SS + L +W+L + +L
Sbjct: 786 IMMTLTNWYSPNEGNSSLLRLSRSWPAVWIKMGSSSACVWLYIWTLIAPVL 836
>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
Length = 1450
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 278 GARRPFIMSTGETLV--TAKTRSTIFSG 355
G RRPFI++ ETL+ +T ST SG
Sbjct: 137 GLRRPFIINNEETLMHYATETESTCSSG 164
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 278 GARRPFIMSTGETLV--TAKTRSTIFSG 355
G RRPFI++ ETL+ +T ST SG
Sbjct: 618 GLRRPFIINNEETLMHYATETESTCSSG 645
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,261
Number of Sequences: 59808
Number of extensions: 255925
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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