Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30442
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 126 6e-30
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 6.8
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 6.8
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.8
U39852-8|AAK39261.2| 113|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF125964-9|AAD14749.2| 523|Caenorhabditis elegans Glutamate tra... 27 6.8
AF101319-5|AAC69356.2| 530|Caenorhabditis elegans Hypothetical ... 27 6.8
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 126 bits (304), Expect = 6e-30
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICL 183
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DL HEI TVG FK A+NFLWPF
Sbjct: 184 EDLAHEIATVGPHFKEATNFLWPF 207
Score = 71.7 bits (168), Expect = 2e-13
Identities = 29/37 (78%), Positives = 35/37 (94%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRMV 363
+LNNPTGGW KKT H+V+GGDFGNRED+IN+LLR+MV
Sbjct: 208 KLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKMV 244
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 RKVQVRE*FPVALQLNNPTG-GWRKKTIHYVDGGDFGNREDK 336
+K R P+ +QL + T GW+K +HY G + DK
Sbjct: 175 KKHSKRSGVPIDIQLESTTEPGWKKARVHYYRLDTDGLKADK 216
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 RKVQVRE*FPVALQLNNPTG-GWRKKTIHYVDGGDFGNREDK 336
+K R P+ +QL + T GW+K +HY G + DK
Sbjct: 190 KKHSKRSGVPIDIQLESTTEPGWKKARVHYYRLDTDGLKADK 231
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 RKVQVRE*FPVALQLNNPTG-GWRKKTIHYVDGGDFGNREDK 336
+K R P+ +QL + T GW+K +HY G + DK
Sbjct: 190 KKHSKRSGVPIDIQLESTTEPGWKKARVHYYRLDTDGLKADK 231
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 RKVQVRE*FPVALQLNNPTG-GWRKKTIHYVDGGDFGNREDK 336
+K R P+ +QL + T GW+K +HY G + DK
Sbjct: 175 KKHSKRSGVPIDIQLESTTEPGWKKARVHYYRLDTDGLKADK 216
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 RKVQVRE*FPVALQLNNPTG-GWRKKTIHYVDGGDFGNREDK 336
+K R P+ +QL + T GW+K +HY G + DK
Sbjct: 190 KKHSKRSGVPIDIQLESTTEPGWKKARVHYYRLDTDGLKADK 231
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 RKVQVRE*FPVALQLNNPTG-GWRKKTIHYVDGGDFGNREDK 336
+K R P+ +QL + T GW+K +HY G + DK
Sbjct: 190 KKHSKRSGVPIDIQLESTTEPGWKKARVHYYRLDTDGLKADK 231
>U39852-8|AAK39261.2| 113|Caenorhabditis elegans Hypothetical
protein K10C2.6 protein.
Length = 113
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 246 HRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 127
H+ +LNF+ +V S + + I LC S+FS ++L +
Sbjct: 27 HKNFEIFLNFTNSVSFSEILTVASIKLC--SIFSKIILNI 64
>AF125964-9|AAD14749.2| 523|Caenorhabditis elegans Glutamate
transporter family protein7 protein.
Length = 523
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 375 SIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAP 277
S++L H + L F +TK SP+D+ G++ P
Sbjct: 270 SLFL-HCVIAVPTLYFFITKKSPIDVAKGMVQP 301
>AF101319-5|AAC69356.2| 530|Caenorhabditis elegans Hypothetical
protein K08D9.6 protein.
Length = 530
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 310 PRRHNEWSSCANHQLDCSIE 251
P RH EW + A Q+DC ++
Sbjct: 262 PNRHVEWRNQAGAQIDCLLQ 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,290,311
Number of Sequences: 27780
Number of extensions: 191108
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -