Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30442
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    28   0.046
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   9.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 0.046
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 155 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWG 51
           A++   CW  + Y+V  AW I    ++    L WG
Sbjct: 65  AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWG 99


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -3

Query: 137 CWK*LVYVVHSAWRIHVCILTHGHSLSW 54
           CW  + Y++  AW +   +++    L W
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -3

Query: 137 CWK*LVYVVHSAWRIHVCILTHGHSLSW 54
           CW  + Y++  AW +   +++    L W
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPW 189


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 138 LLEVIGIRCPLSLAN 94
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 309 PVDIMNGLLAPTTSWI 262
           P  I+NG   P T+W+
Sbjct: 150 PGKIVNGKRVPPTNWV 165


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 304 RHNEWSSCANHQLDCSIEGPQ 242
           R N W S  N  +  S  GPQ
Sbjct: 25  RGNTWLSLDNSNMSMSSVGPQ 45


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 304 RHNEWSSCANHQLDCSIEGPQ 242
           R N W S  N  +  S  GPQ
Sbjct: 25  RGNTWLSLDNSNMSMSSVGPQ 45


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 20  RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIV 145
           R+ +PY  W + N K    +V     A     R+ I  + I+
Sbjct: 106 RLLQPYPDWSWANYKDCSGIVSAYKIAIDKFDRLWILDSGII 147


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 309 PVDIMNGLLAPTTSWI 262
           P  I+NG   P T+W+
Sbjct: 150 PGKIVNGKRVPPTNWV 165


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 203 FTVGEKFKYASNFL 244
           F+ GE+ + +SNFL
Sbjct: 142 FSTGERCRISSNFL 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,582
Number of Sequences: 438
Number of extensions: 2549
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)