Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30442
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 132 1e-31
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 132 1e-31
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 130 3e-31
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 130 3e-31
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 130 3e-31
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 128 1e-30
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 81 3e-16
At3g58480.1 68416.m06518 calmodulin-binding family protein conta... 31 0.39
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 30 0.51
At5g50320.1 68418.m06232 radical SAM domain-containing protein /... 27 6.3
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 26 8.3
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 132 bits (318), Expect = 1e-31
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
ATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICV
Sbjct: 127 ATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICV 186
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI TVG FK A+NFLWPF
Sbjct: 187 EDLIHEIMTVGPHFKEANNFLWPF 210
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
QL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 211 QLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 132 bits (318), Expect = 1e-31
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
ATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICV
Sbjct: 122 ATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICV 181
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI TVG FK A+NFLWPF
Sbjct: 182 EDLIHEIMTVGPHFKEANNFLWPF 205
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
QL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 206 QLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 241
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (314), Expect = 3e-31
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICV
Sbjct: 124 ATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICV 183
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI TVG FK A+NFLWPF
Sbjct: 184 EDLIHEIMTVGPHFKEANNFLWPF 207
Score = 52.8 bits (121), Expect = 8e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
QL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 208 QLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (314), Expect = 3e-31
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICV
Sbjct: 124 ATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICV 183
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI TVG FK A+NFLWPF
Sbjct: 184 EDLIHEIMTVGPHFKEANNFLWPF 207
Score = 52.8 bits (121), Expect = 8e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
QL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 208 QLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (314), Expect = 3e-31
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICV
Sbjct: 124 ATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICV 183
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI TVG FK A+NFLWPF
Sbjct: 184 EDLIHEIMTVGPHFKEANNFLWPF 207
Score = 52.8 bits (121), Expect = 8e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
QL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 208 QLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 128 bits (310), Expect = 1e-30
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +2
Query: 2 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 181
AT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC
Sbjct: 122 ATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICT 181
Query: 182 XDLIHEIFTVGEKFKYASNFLWPF 253
DLIHEI TVG FK A+NFLWPF
Sbjct: 182 EDLIHEILTVGPHFKEANNFLWPF 205
Score = 52.8 bits (121), Expect = 8e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 253 QLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 360
QL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 206 QLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 81.0 bits (191), Expect = 3e-16
Identities = 32/74 (43%), Positives = 52/74 (70%)
Frame = +2
Query: 29 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVXDLIHEIFT 208
+PY+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ + DL++EI
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIAR 194
Query: 209 VGEKFKYASNFLWP 250
VG+ F+ FL P
Sbjct: 195 VGDHFREVMRFLGP 208
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +1
Query: 250 LQLNNPTGG--WRKKTIHYVDGGDFGNREDKINDLLRRM 360
L+LN P RKK + + +GGD GNREDKINDL+ +M
Sbjct: 209 LKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLISKM 246
>At3g58480.1 68416.m06518 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 575
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 331 LRGYQSLPRRHNEWSSCANHQLDCSIEGPQEIT-RVLE 221
++ YQ R H+ WS+ A ++ C + P E+ RVLE
Sbjct: 498 IKSYQLAERLHSRWSTGAGPRISCMRDYPSELQFRVLE 535
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 30.3 bits (65), Expect = 0.51
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 258 QLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGIRCPLSLA 97
+LKGH+K + L FS + I + S +C WS+ + + + I+ P A
Sbjct: 899 KLKGHQKRITGLAFSTALNI-LVSSGADAQICFWSIDTWEKRKSVAIQMPAGKA 951
>At5g50320.1 68418.m06232 radical SAM domain-containing protein /
GCN5-related N-acetyltransferase (GNAT) family protein
contains Pfam profiles PF00583: acetyltransferase, GNAT
family, PF04055: Radical SAM superfamily
Length = 565
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 369 YLNHPPEKIVDLVFAVTKVSP 307
Y N+PPE++VD+V + + P
Sbjct: 355 YRNYPPEQLVDIVARILSMVP 375
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 270 SWIVQLKGHRKLLAYLNFSP 211
S ++QLKGH+ + +L FSP
Sbjct: 280 SRVMQLKGHKSAVTWLCFSP 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,869,302
Number of Sequences: 28952
Number of extensions: 179832
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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