Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30439
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   107   1e-24
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   107   1e-24
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   0.89 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.5  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   1.5  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   1.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   2.0  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   2.0  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   3.6  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   3.6  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.6  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.2  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   8.3  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.3  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  107 bits (257), Expect = 1e-24
 Identities = 53/90 (58%), Positives = 66/90 (73%)
 Frame = +1

Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 426
           G  T+D RL  +PK++VAAL  T+ ARARIL AGGE+LT DQLALRAPTG  TVL++G++
Sbjct: 86  GTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKK 145

Query: 427 NAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
           +AREA RHFG     P  H  PYVR++  K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPI
Sbjct: 2   GIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 182 SVSRLA--RHMKKPTREGLIAVVVGT 253
           S+S++A     K  + EG   V+VGT
Sbjct: 62  SISKIAALTSRKSASLEGKTTVIVGT 87


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  107 bits (257), Expect = 1e-24
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = +1

Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 426
           G  T+D R+  +PK+++AAL  T+ ARARIL AGGE+LT DQLALRAPTG  TVLV+G++
Sbjct: 86  GTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKK 145

Query: 427 NAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
           +AREA RHFG     P  H  PYVR++  K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPI
Sbjct: 2   GIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 182 SVSRLA--RHMKKPTREGLIAVVVGT 253
           S+S++A     K  + +    VVVGT
Sbjct: 62  SISKIAALTSRKSASSQNKTTVVVGT 87


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 238 RGSGDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 375
           R S     D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 51  RLSRQDAMDLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 363 SKNFSSSSQNACTSFFGNMKSSHRH 289
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 360 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICAVPT 244
           KN+ SS  +  TS + N+ +S+R +R  +QS V    PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 408 YCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICAVPTTTA 235
           Y  +  +ST +  + S  F+  +QN+  + F N  +S  + +   Q++ I   PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSA 214


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 309 MKSSHRHLRYLVQSHVICAVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRL 157
           +K+S  HL   +Q  ++        + P  + +++WR +   E    +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 341 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 481
           LL   F+ ++ ++  LRL   +     WY ++++L+ +C T   +   RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 27/105 (25%), Positives = 43/105 (40%)
 Frame = -2

Query: 462 SRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLR 283
           S AKV +CL   S  +     +   S    L   +   SS+       F ++ +S R+  
Sbjct: 95  SFAKVINCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMVQAGQSFSHIVASKRNKD 154

Query: 282 YLVQSHVICAVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKS 148
           +L+ +  I A        PS VGFF+W       +G  +  L+ S
Sbjct: 155 HLLVTDGIYAYVR----HPSYVGFFIWALGTQMLLGNFVSTLLFS 195


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 401 RQYWYKVSEMLVRQCVTLALLQ--EHRAL-TLNPMFAPRT*KSKAQSS 535
           + +W  VS  +   CV L  L+  +HR++  L  M  P   KS   SS
Sbjct: 30  KSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSS 77


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 495 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 331
           +G S+ A    W RA +  C   I   L+ +  +    TK   +      KN SS++  A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363

Query: 330 CTSFF 316
           C+SFF
Sbjct: 364 CSSFF 368


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -2

Query: 468 SWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 289
           S S + +    TS S +       +S S+ S    S + SSSS +  +S   +  +SHR 
Sbjct: 122 SSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181

Query: 288 LRYLVQSHVICAVPTTT 238
             +   S+     P TT
Sbjct: 182 TSHKSSSYRPTVFPYTT 198


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 367 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 462
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 401 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 490
           R  +YK SE ++ Q   + +LQ+  ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,217
Number of Sequences: 5004
Number of extensions: 52412
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)