Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30439
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   136   8e-33
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.3  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    28   5.7  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    28   5.7  
U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.       27   10.0 
U21732-1|AAA85853.1|  970|Caenorhabditis elegans UNC-44 protein.       27   10.0 
U21731-1|AAA85852.1|  985|Caenorhabditis elegans UNC-44 protein.       27   10.0 
AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  136 bits (330), Expect = 8e-33
 Identities = 62/87 (71%), Positives = 74/87 (85%)
 Frame = +1

Query: 256 TNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAR 435
           T+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+AR
Sbjct: 87  TDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAR 146

Query: 436 EAVRHFGPAPGAPRSHTKPYVRTKDMK 516
           EA +HFGPAPG P SHTKPYVR+K  K
Sbjct: 147 EAEKHFGPAPGVPHSHTKPYVRSKGRK 173



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 38/84 (45%), Positives = 48/84 (57%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+
Sbjct: 2   GIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPL 61

Query: 182 SVSRLARHMKKPTREGLIAVVVGT 253
           S+++LAR ++K   E    V + T
Sbjct: 62  SLAKLARAVQKAGNENKTVVTLST 85


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 296 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 463
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDST 258
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS+
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSS 161


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDST 258
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS+
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSS 245


>U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical
           protein R07G3.7b protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 157 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSTNDVRLY 276
           +P +P   L  S    H +A    F+C+GS DS N  +L+
Sbjct: 64  QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 103


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 157 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSTNDVRLY 276
           +P +P   L  S    H +A    F+C+GS DS N  +L+
Sbjct: 199 QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 238


>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
          Length = 1786

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 433  REAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPV 531
            R+A+RHF   P A  +  K  VRT+D+  + PV
Sbjct: 1601 RDAIRHFEEVPAA--TLVKREVRTEDLVTREPV 1631


>U21732-1|AAA85853.1|  970|Caenorhabditis elegans UNC-44 protein.
          Length = 970

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 433 REAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPV 531
           R+A+RHF   P A  +  K  VRT+D+  + PV
Sbjct: 698 RDAIRHFEEVPAA--TLVKREVRTEDLVTREPV 728


>U21731-1|AAA85852.1|  985|Caenorhabditis elegans UNC-44 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 433 REAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPV 531
           R+A+RHF   P A  +  K  VRT+D+  + PV
Sbjct: 771 RDAIRHFEEVPAA--TLVKREVRTEDLVTREPV 801


>AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical
           protein Y39E4B.6 protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 384 TKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC---AVPTTTAI 232
           T+SQL              T   G+ ++ +RHLR L+ +H I     V +TTAI
Sbjct: 172 TRSQLAAELLERDQDTQVLTRELGSKETENRHLRSLLSAHGISPDEPVTSTTAI 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,374
Number of Sequences: 27780
Number of extensions: 320921
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)