Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30438
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   3.4  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    27   3.4  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   3.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.0  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   7.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   7.9  

>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -3

Query: 231 DERE*ENRQSVSRTTRPWRGKRQSELDRFSCTQHSLLQEKFNLMMKNEKNHNTTDRKRSF 52
           D R+ +  Q      R    +R   + RFS   HSL   +  L   + +N NT  +++S 
Sbjct: 169 DSRDTQQGQRQEDLQRQLENERSRLIARFS---HSLYSFQHGLSFGSPQNRNTPLQRQSA 225

Query: 51  ASFTRTIILTVE 16
            S++  + + V+
Sbjct: 226 DSYSTPVCIEVD 237


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 398 FQQ*TFTILDISLFEQ*SHMGKFNFIFIFKYFVMK 502
           FQ  T TI D+SL  +   + KFN    F   VMK
Sbjct: 78  FQNRTLTIFDVSLNSKKEPLSKFNVKIHFPSNVMK 112


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 288 LNALKEVSLQNVY*LLKIAKLNYNFIYKFI 377
           L ++K++  QNV  L+K+ + N+NF   F+
Sbjct: 282 LESVKQLGTQNVLDLIKLVEWNHNFGIHFM 311


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 165 QSELDRFSCTQHSLLQEKFNLMMKNEKNHNTTDRKRS 55
           Q E D ++  Q  +LQE+ + +MK + N +T + K S
Sbjct: 254 QQERD-YALNQVEILQERVDTLMKQKANSSTANEKLS 289


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 423 WIYRCSSSDHTWGN--LISFLYSN 488
           W+Y  S+ DH W +  +I +L SN
Sbjct: 118 WVYVTSTDDHDWHDIFMIGYLISN 141


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 369 KFIINLIF*SFNSKLLLYWIYR 434
           K +++ +F + N + L+YWI+R
Sbjct: 382 KLVVSQVFTAANYEYLVYWIFR 403


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 111 ISLVIGNAVYKKNDLAHF-VFSLSKVEWFARRSVYSLTLARPKLYLFSLP 257
           +S  +GN+      L H  V  L   EWF      SL+++   +Y  S+P
Sbjct: 451 LSEFLGNSANTLTSLLHLTVLDLKIFEWFKEYLSQSLSVSLENVYPGSIP 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,037
Number of Sequences: 5004
Number of extensions: 56162
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)