Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30438
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    28   8.2  
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413...    28   8.2  

>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 74  VLWFFSFFIIKLNFSCNRECCVQEKRSSSLCLFPL 178
           ++WF  FF++ L   C   CC     + S   + L
Sbjct: 113 LVWFVLFFLVMLGICCKHCCCPHRSYTYSRVAYAL 147


>02_01_0564 -
           4136114-4136566,4136977-4137047,4137197-4137275,
           4137380-4137535,4137867-4137938,4138081-4138161,
           4138237-4138302,4138482-4138547,4138648-4138698,
           4138982-4139109,4139239-4139377,4139606-4139643,
           4139679-4139748,4140194-4140277
          Length = 517

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 88  KEPQYYRSQKKFRFFHAHHYSDRR 17
           ++ QYY+SQ + +++  HH+ D +
Sbjct: 432 QQHQYYQSQHQQQYYQPHHFQDHQ 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,377
Number of Sequences: 37544
Number of extensions: 272190
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)