Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30438
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12080| Best HMM Match : p450 (HMM E-Value=0)                        31   0.90 
SB_5584| Best HMM Match : p450 (HMM E-Value=1)                         30   2.1  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_38287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_49449| Best HMM Match : Smg4_UPF3 (HMM E-Value=4.7)                 28   8.4  
SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_12080| Best HMM Match : p450 (HMM E-Value=0)
          Length = 522

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 141 KKNDLAHFVFSLSKVEWFARRSVYSLTLARPKL 239
           +K   AH VFSL+  EW   RSV +  + +PK+
Sbjct: 136 EKRKQAHGVFSLNGEEWLKARSVLNKKMLKPKV 168


>SB_5584| Best HMM Match : p450 (HMM E-Value=1)
          Length = 286

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 141 KKNDLAHFVFSLSKVEWFARRSVYSLTLARPKL 239
           +K   AH VFS    EWF  RSV +  + +PK+
Sbjct: 103 EKRKQAHGVFSSLGEEWFKARSVLNKKMLKPKV 135


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 496 YENIKFFCCFEFGMNGNFILLNL 564
           Y+ +  +CC  FG  G +I+ NL
Sbjct: 178 YDAVSAYCCARFGRGGGYIVANL 200


>SB_38287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 204 SVSRTTRPWRGKRQSE--LDRFSCTQHSLLQEKFNLMMKNEKNHNTTDRKRSFASFTRTI 31
           ++ +TT+P RGKRQ+   L  F   +  L Q    L +   +    + R ++  S T T 
Sbjct: 27  TIGQTTKPNRGKRQAHVYLREFDSCEIMLPQHTRILQVSPLQEFYKSHRYKNSTSLTVTR 86

Query: 30  ILTVEDI 10
           IL V  +
Sbjct: 87  ILQVSSL 93


>SB_49449| Best HMM Match : Smg4_UPF3 (HMM E-Value=4.7)
          Length = 258

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 204 SVSRTTRPWRGKRQSE--LDRFSCTQHSLLQEKFNLMMKNEKNHNTTDRKRSFASFTRTI 31
           ++ +TT+P RGKRQ+   L  F   +  L Q    L +   +    + R ++  S T T 
Sbjct: 27  TIGQTTKPNRGKRQAHVYLREFDSCEIMLPQHTRILQVSPLQEFYKSHRYKNSTSLTVTR 86

Query: 30  ILTVEDI 10
           IL V  +
Sbjct: 87  ILQVSSL 93


>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 626 RSVNINYPVTIFR*LLEVSPFKFNKIKFP-FMPNSKQQKNLI 504
           R+VNI +PV   + LL ++  ++  I  P FMP+ K  K L+
Sbjct: 114 RAVNIAFPVITIQNLLVIALERYVAIFHPFFMPSIKTVKRLV 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,993,725
Number of Sequences: 59808
Number of extensions: 353546
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)