Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30438
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    28   5.2  
At4g23550.1 68417.m03393 WRKY family transcription factor contai...    28   6.8  
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain...    28   6.8  
At5g11270.1 68418.m01316 expressed protein                             27   9.0  

>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 222 E*ENRQSVSRTTRPWRGKRQSELDRFSCTQHSLLQEKFNLMMKNEKNHNTT 70
           E +NR+S  RTT      R+ EL R +   HS   E   L     ++HNTT
Sbjct: 282 ESQNRKSELRTTTMESNSRKPELKRTTMESHSTKPE---LRKGTMESHNTT 329


>At4g23550.1 68417.m03393 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA binding domain
          Length = 304

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 117 EKFNLMMKNEKNHNTTDRKRSFASFTR 37
           EKF +   NE NH    R+ S A  TR
Sbjct: 179 EKFTITYTNEHNHELPTRRNSLAGSTR 205


>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 441

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 268 QIRYGREKRYNLGRARVRE*TERLANHSTLEREKTK 161
           +I   R+K+ +   ARV+E   ++ N   L++EKTK
Sbjct: 235 EISLARKKKVDADAARVQELEGKVKNQVELDKEKTK 270


>At5g11270.1 68418.m01316 expressed protein 
          Length = 354

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 189 WFARRSVYSLTLARPKLYLFSLP*RICRELSYILNALKE 305
           W  +R  Y+L   R K  + +L   +C + +Y+L  L++
Sbjct: 189 WQLKRLAYALKAGRRKTSIKNLAAEVCLDRAYVLELLRD 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,955
Number of Sequences: 28952
Number of extensions: 258374
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)