Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30437
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888...    29   3.9  
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    28   6.7  

>05_03_0146 +
           8883761-8883860,8886000-8886086,8886574-8886684,
           8887021-8887121,8887208-8887258,8887347-8887496,
           8887577-8887639,8887728-8887814,8887908-8888018,
           8888097-8888387,8889372-8889815
          Length = 531

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 421 KTTNKKNFQKRNKEECKAVITFLKT*NNVLGNFRYMAFLPVHLYQAMFESRKARYQFF** 600
           KTT ++N    N+ + K V+T  +T  N +  +  + F P     A+ E   AR++    
Sbjct: 365 KTTEQRNTNVINRTDYKCVMTMWRTRENYIPLYFKLDFCPFIHSTALSEVTNARFKRGVG 424

Query: 601 NTHS 612
            THS
Sbjct: 425 PTHS 428


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 384 TLIN*NYKFEHYYAYIVKDYFYNHRLRLDYITDK 283
           +L N  YK  H +   +  Y +NH  R DYI+DK
Sbjct: 205 SLCNKQYKLAHEFESHLSSYDHNH--RKDYISDK 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,675
Number of Sequences: 37544
Number of extensions: 303796
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)