Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30437
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    29   5.2  
SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)                  28   6.9  
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)           28   6.9  

>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 86  HNANIF*K*CIKVTLNQYRKHYTHCHVFNTHTH 184
           H  N+  + C K    +Y  H TH H+ +THTH
Sbjct: 380 HAMNVMHRVCGKYDTTRYSTH-THTHLHDTHTH 411


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 406 PLVLTKTTNKKNFQKRNKEECKAVITFLKT*NNVLGNFRYMAFLPVHLYQAMFESRKARY 585
           PL+    TN +  Q+ N  + K   ++LK   N L      A +   ++ + F S+ AR+
Sbjct: 600 PLIRELRTNPEVLQEDNSPDLKQYFSYLKIFMNHLPRDLKEALIRFAVFPSSFTSQNARF 659

Query: 586 QF 591
            F
Sbjct: 660 LF 661


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 53  SHTYREYREGVHNANIF*K*CIKVTLNQYRKHYTHCHVFNTHTHIY 190
           +H YR Y  G  + +++     +   + YR   T+ HV+ T+ H+Y
Sbjct: 783 AHLYRTYAHGTEHMHVY-----RTYAHLYR---TYAHVYRTYAHVY 820


>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
          Length = 378

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 137 YRKHYTHCHVFNTHTHIYI 193
           Y  + TH HV+ TH H+Y+
Sbjct: 18  YHVYMTHYHVYMTHYHVYM 36


>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 137 YRKHYTHCHVFNTHTHIYI 193
           Y  + TH HV+ TH H+Y+
Sbjct: 18  YHVYMTHYHVYMTHYHVYM 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,019,201
Number of Sequences: 59808
Number of extensions: 411402
Number of successful extensions: 1107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)