Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30432
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 243 VRAAGHNGPRSELFGQ 196
           +RAAG+ GP+ ++ GQ
Sbjct: 91  IRAAGYYGPQQQMDGQ 106


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 523 GDSPRECRSRYQYDQ 567
           G+S ++CR+RY  DQ
Sbjct: 568 GNSMKKCRARYGLDQ 582


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 523 GDSPRECRSRYQYDQ 567
           G+S ++CR+RY  DQ
Sbjct: 460 GNSMKKCRARYGLDQ 474


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 172 FLPAEDQPLTKKFGSW 219
           + P +DQ    KFGSW
Sbjct: 134 WFPFDDQHCDMKFGSW 149


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 172 FLPAEDQPLTKKFGSW 219
           + P +DQ    KFGSW
Sbjct: 134 WFPFDDQHCDMKFGSW 149


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 172 FLPAEDQPLTKKFGSW 219
           + P +DQ    KFGSW
Sbjct: 134 WFPFDDQHCDMKFGSW 149


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 172 FLPAEDQPLTKKFGSW 219
           + P +DQ    KFGSW
Sbjct: 134 WFPFDDQHCDMKFGSW 149


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 172 FLPAEDQPLTKKFGSW 219
           + P +DQ    KFGSW
Sbjct: 134 WFPFDDQHCDMKFGSW 149


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 199 SAADPRRAGSTASNKTKPTLKDSTASPEQSTTQPTNRL 86
           S A P    + +++ + PT+     SP+  + +PT  +
Sbjct: 217 SVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNI 254


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 348 KEHNVKTKMVVADFSKGLEVYAHI 419
           K  N+KT + +  +++G E Y+ +
Sbjct: 92  KNPNLKTLIAIGGWNEGSETYSQV 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,103
Number of Sequences: 336
Number of extensions: 2772
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)