Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30432
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 60 4e-10
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 38 0.001
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 30 0.35
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 27 1.8
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 26 4.3
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 26 4.3
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 4.3
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 5.6
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.6
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 5.6
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 25 9.9
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.9
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 59.7 bits (138), Expect = 4e-10
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 AKELARRGLNVVIISRNPEKLKATVTEIEKEHNVKTKMVVADFSK-GLEVYAHIEEELKD 437
A +LA G NVV+ISR EKL A E+E VKT+ + D++K E + + ++L
Sbjct: 74 ATQLAMSGFNVVLISRTQEKLDALAKELETVAKVKTRTIAIDYTKTTAETFEKLHQDLVG 133
Query: 438 IPIGILVNNVG 470
PI +L+NNVG
Sbjct: 134 TPITVLINNVG 144
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 205 KFGSWAVVTGGTDGIG 252
K G WAVVTG TDGIG
Sbjct: 55 KKGYWAVVTGATDGIG 70
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 261 AKELARRGLNVVIISRNPEKLKATVTEIEKE-HNVKTKMVVADFSKGLEVYAHIEEEL-K 434
A ELAR+G V + RN EK + + +I E + K + + D VY E + K
Sbjct: 59 ALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDLLDFESVYQAAESFIAK 118
Query: 435 DIPIGILVNNVGV 473
+ + ILVNN G+
Sbjct: 119 EEKLHILVNNAGI 131
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.35
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 378 VADFSKGLEVYAHIEEELKDIPIGILVN 461
++DFSK L++Y H+E +L + I VN
Sbjct: 91 LSDFSKALKIYEHLENDLPEQRADIRVN 118
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 ADFSKGLEVYAHIEEELKDI-PIGILVNNVGVQYDYXXE 494
AD SK ++ IE+ ++ + PI +L+NN G+ D E
Sbjct: 52 ADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFE 90
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 411 RTLQGLY*SQQPPSWFSRCVLFR 343
+T+ LY QQ PSW ++ LFR
Sbjct: 266 QTIASLYDDQQLPSWITKDDLFR 288
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = -2
Query: 316 SGFLLMMTTLRPRRASSLAXCYRYRPCRRSQRPTIRTFWSAADPRRAGSTASNKTKPTLK 137
+G++ + ++ R + P + +PTI W AA AG+T T K
Sbjct: 282 AGYVFIEANIKKWRLAPAVGSLAPPPSYSTSQPTIS--WDAASESSAGTTTQGDTNRPDK 339
Query: 136 DSTASP 119
SP
Sbjct: 340 SKNRSP 345
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +1
Query: 172 FLPAEDQPLTKKFGSWAVVTGGTDGIGNTTPRSWHD 279
F AED P+ K + T G+ P W D
Sbjct: 18 FADAEDSPVMKMIAQSYIFTPTLPGVNKAPPEFWSD 53
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 239 RTVSVTXRQGAGTTRPQRGHHQQKP*KIESN 331
R S +QG + +PQR H ++K K+ +
Sbjct: 1292 RDTSTNRKQGQASKQPQRRHRKEKDSKVSES 1322
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -1
Query: 251 PIPSVPPVTTAHDPNF--LVSG*SSAGRKYGIK*DETNSKGLHSESRAIDNTANKPITTR 78
PIP +P V + DP F ++S + R Y ++ NSK +H+ S+ + T+R
Sbjct: 309 PIPLLPKVVSLPDPRFTNVLSAFDALTRTYLLR---QNSKVVHATSQ-----KQEMQTSR 360
Query: 77 RTINN 63
R +N+
Sbjct: 361 RVVNS 365
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +1
Query: 214 SWAVVTGGTDGIGNTTPRSWHDAASTWSSSAETLKN 321
+WA V+ D + +S+H+ + WS + K+
Sbjct: 152 NWAFVSWSHDDLNELVDKSYHNLHNAWSQLSREAKD 187
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 315 EKLKATVTEIEKEHNVKTKMVVADFSKGLEVYAHIEEELKDIPIGILVNNVGVQYDYXXE 494
EKL T EI+ E + V + K E+Y H E L+ I + V+ ++ + E
Sbjct: 110 EKLLQTEDEIQDEGYSGFENYVEESEKLQEIYHHSSESLRTRSIQMAVDQKNMEMELDDE 169
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 163 SNKTKPTLKDSTASPEQSTTQPTNRLQLGEL 71
S +KP P QST P N L +GEL
Sbjct: 357 SKPSKPNTLTEDEKPLQSTKLPGNSLTVGEL 387
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 172 STASNKTKPTLKDSTASPEQSTTQPTNRLQ 83
S A+++ KP +KDS +S + ++ N ++
Sbjct: 110 SVANSRLKPVIKDSLSSKQTKSSMKRNTVE 139
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -2
Query: 229 SQRPTIRTFWSAADPRRAGSTASN----KTKPTLKDSTASPEQSTTQP 98
SQ + + SA+ R T + KTK T ST +P ++TT P
Sbjct: 473 SQEKERKGYTSASPDRPLSQTITESSVAKTKSTTPKSTDTPTEATTSP 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,552
Number of Sequences: 5004
Number of extensions: 46956
Number of successful extensions: 188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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