Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30432
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)             31   1.1  
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)             30   1.5  
SB_36172| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33638| Best HMM Match : adh_short (HMM E-Value=0.0014)              29   3.4  
SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)             29   4.5  
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)            29   4.5  
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    28   6.0  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        28   7.9  
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 28   7.9  
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)             28   7.9  

>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 261 AKELARRGLNVVIISRNPEKLKATVTEIE-KEHNVKTKMVVADFSKGLEVYAHIEEELKD 437
           A ELARRG  V++  R+ E  +   +EI  K    +      D +  + V    E+ +++
Sbjct: 85  ALELARRGARVIMACRDLESAEKAASEIRYKVPKAEVVCRFLDLNSLISVRKFAEDVMRE 144

Query: 438 IP-IGILVNNVGV 473
              + ILVNN GV
Sbjct: 145 EKRLDILVNNAGV 157


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 404 SVRSYRRGTQRHSYRYTSEQCWRTVRLXXGAW*PAMSKXWEIVHVNVGAVTSMTRLVVK 580
           S R+  RG  RH   Y   + WR      GAW P+ +   E + +N+G V  +T +  +
Sbjct: 403 SDRNKTRGRDRHEPGY---EPWRARLGSSGAWCPSTTSQEEYIEINLGDVYVITAIATE 458


>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
          Length = 316

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +3

Query: 261 AKELARRGLNVVIISRNPEKLKATVTEIEKEHNVKTKMV----VADFSKGLEVYAHIEEE 428
           A +LA+RG  V+I +RN ++  A V +I+     +   V    +A  S  +  +A +  +
Sbjct: 54  AVDLAKRGARVIIGARNLDRGNAAVRDIQASSGSQQVFVEHLDLASLS-SVRKFAEVINK 112

Query: 429 LKDIPIGILVNNVGVQY 479
            K+  + IL+NN GV +
Sbjct: 113 -KEERVDILMNNAGVAW 128


>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
          Length = 319

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 261 AKELARRGLNVVIISRNPEKLKATVTEIEKEHNVKTKMV----VADFSKGLEVYAHIEEE 428
           A +LA+RG  V+I +RN ++    V +I+     +   V    +A  S  +  +A +   
Sbjct: 54  AVDLAKRGARVIIGARNLDRGNTAVRDIQSRSGSQQVFVEHLDLASLS-SVRKFAEVMNN 112

Query: 429 LKDIPIGILVNNVGVQY 479
            K+  I IL+NN GV +
Sbjct: 113 -KEERIHILINNAGVGF 128


>SB_36172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 238 CRRSQRPTIRTFWSAADPRRAGSTASNKTK----PTLKDSTASPEQSTTQP 98
           CR S +P  +   +A  P  A +T S K K    P LK +T SP+++  +P
Sbjct: 21  CRNSMKPAAKKPKAAKKPA-AKTTPSKKAKSPKKPALKKATKSPKKAAKKP 70


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 292 TLRPRRASSLAXCYRYRPCRRSQRP 218
           TLRP R +    CY  RPCR   RP
Sbjct: 173 TLRPCRYTLRPRCYTLRPCRYMLRP 197



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -2

Query: 292 TLRPRRASSLAXCYRYRPCRRSQRP---TIRTFWSAADP-RRAGSTASNKTKPTLKDSTA 125
           TLRPRR +     Y  RPCR + RP   T+R  +    P R    T     +P  +  T 
Sbjct: 103 TLRPRRYTLRPCRYTLRPCRYTLRPCRYTLRPRYCTLRPCRYTLRTCRYTLRP--RHYTL 160

Query: 124 SPEQSTTQP 98
            P + T +P
Sbjct: 161 RPRRYTLRP 169



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 292 TLRPRRASSLAXCYRYRPCRRSQRPTIRT 206
           TLRPRR +     Y  RPCR + RP   T
Sbjct: 159 TLRPRRYTLRPCRYTLRPCRYTLRPRCYT 187



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 292 TLRPRRASSLAXCYRYRPCRRSQRP 218
           TLRPRR +     Y  RPCR + RP
Sbjct: 306 TLRPRRYTLRPCRYTLRPCRYTLRP 330



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 292 TLRPRRASSLAXCYRYRPCRRSQRP---TIRTFWSAADPRR 179
           TLRP R +     Y  RPCR + RP   T+R       PRR
Sbjct: 271 TLRPHRYTLRPCRYTLRPCRYTLRPCRYTLRPCRYTLRPRR 311


>SB_33638| Best HMM Match : adh_short (HMM E-Value=0.0014)
          Length = 268

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 267 ELARRGLNVVI-ISRNPEKLKATVTEIEKEHNVKTKMVVADFSKGLEVYAHIE--EELKD 437
           +LA+ G  +++  + N E+ +   +E+E ++NV+   V  D ++   + A  E  +   D
Sbjct: 100 KLAKNGYYLILGYNANDERAEKAKSELESKYNVRVFTVKGDVAEDSTINAFFESIKANFD 159

Query: 438 IPIGILVNNVGVQ 476
             +   V+N G+Q
Sbjct: 160 NKLNAFVHNAGLQ 172


>SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +1

Query: 136 PLELVSSYLMPYFLPAEDQPLTKKFGS------WAVVTGGTDGIGNTTPRSW 273
           P+ L SS +  Y++       T KF S      W+++T  T G G+ TPR+W
Sbjct: 318 PVVLFSSII--YYVEKNIDGKTTKFRSIPESFWWSLITMTTVGYGDMTPRTW 367


>SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)
          Length = 228

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 524 EIVHVNVGAVTSMTRLVVKXMAXXGKGAVVNVSSG 628
           ++V VN+    ++ R  +  M   GKG +VN SSG
Sbjct: 106 KVVDVNLKGSANVIRSFLPKMIKAGKGVIVNFSSG 140


>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
          Length = 652

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 178 AGSTASNKTKPTLKDSTASPEQSTTQPTN 92
           A ++ +  T PT K STA P  STT+P +
Sbjct: 527 ATTSTTPTTMPTRKPSTAQPSVSTTKPND 555


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 202 WSAADPRRAGSTA--SNKTKPTLKDSTASPEQSTTQPTNR 89
           WS++     GS+A  ++ +    + S A PE ST+ P+NR
Sbjct: 215 WSSSSSSACGSSAMQASPSNSPHEKSHAQPENSTSDPSNR 254


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 155  DETNSKGLHSESRAIDNTANKPITTRRTINNVKNIFR 45
            D+ N+  L S S  I NT+ KP++    ++N + I R
Sbjct: 1390 DQLNADILGSSSNNITNTSVKPMSPSEKVDNARQIAR 1426


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 309 NPEKLKATVTEIEKEHNVKTKMVVAD--FSKGLEVYAHIEEELKDIPIGILVNN 464
           N + +K ++ + E+  NV  K  V D   S   +   HI+   K +PI I VNN
Sbjct: 641 NLKGVKESLNKTEERDNVDMKRWVKDRTASSVKDDKNHIKPNSKQVPISITVNN 694


>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = -2

Query: 241 PCRRSQRPTIRTFWSAADPRRAGSTASNKTKPTLKDSTASPEQSTTQPT 95
           P R   RPT R      DP R        T  T  D T +  +  T PT
Sbjct: 122 PTRTRHRPTRRRHEPHTDPTRTRHEPHTDTTRTHTDPTQTQHRPNTDPT 170


>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 286 RPRRASSLAXCYRYRPCRRSQRPT-IRTFWSAADPRR--AGSTASNKTKPTLKDSTASPE 116
           R +RASS+     ++P +RSQ PT +   + ++D  +  A ST+S     +   S A PE
Sbjct: 567 RVQRASSIDSAAVFQPSQRSQSPTRLEPGFGSSDSAQIPAPSTSSGFFSGSRLSSLAGPE 626

Query: 115 QSTTQPT 95
             +   T
Sbjct: 627 NLSALKT 633


>SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1526

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 190 QPLTKKFGSWAVVTGGTDGIGNTTPRSW 273
           Q + K F  WA++T  T G G+ TP SW
Sbjct: 481 QNIPKSFW-WAIITLTTVGYGDDTPVSW 507


>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
          Length = 384

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 261 AKELARRGLNVVIISRNPEKLKATVTEIEK----EHNVKTKMVVADFSKGLEVYAHIEEE 428
           A EL   G  VVI SR+  KL+    ++EK      + + K++  +  K  +V   +E  
Sbjct: 33  AAELLSLGSKVVIASRSEGKLQKAAVDLEKFIPPSSSAEVKVIPCNIRKESQVTNLMESS 92

Query: 429 LKDIPIGILVNNV 467
           +      + V N+
Sbjct: 93  MSSYYFSLKVTNL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,332,727
Number of Sequences: 59808
Number of extensions: 374928
Number of successful extensions: 1402
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)