Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SFS7 Cluster: Chromosome 7 SCAF14601, whole genome sh...    34   2.3  
UniRef50_UPI00006CB9DD Cluster: hypothetical protein TTHERM_0055...    33   5.3  
UniRef50_A5UTY0 Cluster: Putative uncharacterized protein; n=2; ...    32   9.3  

>UniRef50_Q4SFS7 Cluster: Chromosome 7 SCAF14601, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 7
           SCAF14601, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 153

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = -1

Query: 267 RELLFWDIVAHLIGPAKTQNLILCNTPTTTIR*ICLVKPKSQYDKINKY 121
           + LL + ++  L+ PAK + + +C +    +R  CLV+PK   +K+N Y
Sbjct: 3   KSLLVFGVLGVLLIPAKCEKISVCTSDNKDLRVDCLVEPKP--NKVNDY 49


>UniRef50_UPI00006CB9DD Cluster: hypothetical protein
           TTHERM_00556700; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00556700 - Tetrahymena
           thermophila SB210
          Length = 374

 Score = 32.7 bits (71), Expect = 5.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 407 TKLILTNFIKVQTVDKIK*CQIPKTSLQVQKQDCITISRPR 285
           TKLIL +F+ +Q   KIK  Q   + L     D + I RPR
Sbjct: 167 TKLILFHFVALQKKKKIKNIQSSDSDLDQSHSDSLNIKRPR 207


>UniRef50_A5UTY0 Cluster: Putative uncharacterized protein; n=2;
           Roseiflexus|Rep: Putative uncharacterized protein -
           Roseiflexus sp. RS-1
          Length = 163

 Score = 31.9 bits (69), Expect = 9.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 346 RSQKRHYKFRNKTALQSPVLGPRQRLTRVTFL 251
           R+  R+Y+F     LQ PV  P +RL RVTF+
Sbjct: 95  RATARYYRFAIGPLLQLPVAVPSRRLRRVTFI 126


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,357,000
Number of Sequences: 1657284
Number of extensions: 9133861
Number of successful extensions: 24008
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24005
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)