Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   1.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.8  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 23  IFGWPSVVYRARELEPALEVLDVFIMCLFCIEAYL 127
           IFGWP V    R +   L  L+ F   L     YL
Sbjct: 235 IFGWPLVFITGRFVIKILVALNFFTSTLEIDNLYL 269


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 352 YFILSTVWTLMKLVNINFVHGLV*RRMNRSKPRVG 456
           +F  +     + L+ +N VH    RR+N     +G
Sbjct: 75  FFFFAICCDFIALIVVNIVHVFRKRRVNYKDSNIG 109


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 448 RVGSSYSISALNVCCLFLKFFDM 516
           R+G+SY    ++V   FLK + +
Sbjct: 213 RLGASYVFVVIDVFSKFLKLYPL 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,761
Number of Sequences: 336
Number of extensions: 2469
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)